PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn003781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 538aa    MW: 59880.7 Da    PI: 4.6332
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn003781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.4e-431713213128
         NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
                  lvv+yLk k++gk++++ ++i+e+d+yk+eP dLp k ++k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd++v++ k ++vg+kktLv++
  Achn003781  17 KLVVYYLKSKISGKSFRF-DAIAEIDVYKSEPVDLPdKsRLKGKDLEWYFFSLLDKKYGNGSRTNRATERGYWKTTGKDRPVFH-KAQTVGMKKTLVYH 113
                 69***************9.99**************95347777777**************************************.9999********** PP

         NAM 110 kgrapkgektdWvmheyrl 128
                 +grap+ge+t+Wvmheyrl
  Achn003781 114 SGRAPRGERTNWVMHEYRL 132
                 *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4615156IPR003441NAC domain
SuperFamilySSF1019411.7E-4917156IPR003441NAC domain
PfamPF023653.7E-1917132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MRSRNGNPRT PPVAYTKLVV YYLKSKISGK SFRFDAIAEI DVYKSEPVDL PDKSRLKGKD  60
LEWYFFSLLD KKYGNGSRTN RATERGYWKT TGKDRPVFHK AQTVGMKKTL VYHSGRAPRG  120
ERTNWVMHEY RLIDEQLEKS GNFQKDAFVL CRIFQKSGSG PKNGEQYGAP FIEEEWEEDE  180
LVMVPGKDAA VEVAVDADAD AYLNGNDIDQ IFGVNIPSED VHPPFSFYYG NDSSNVQKHV  240
DFVDGAQKLL VPDRESYYSP EQPTDLKLLD FPVQNHMDTT LVKDECTGES SNTVNSVYSD  300
YLLDEPLFDA TNDFSFDFGE FLETNDLSNP IEVDLSGFDE LHEHFTFFDP EAFDASMMTG  360
RERIESEKAL VQKPVSDGAQ QESIGSQQQL HDNDFSSSAN QKPGNSGSGM QSSAVKKAIC  420
MLGDIDAPPA FASEFPEKGA ALLLNSAAHS SNPFHTTAGM IHLGDMAMSG NGIYWSLEKH  480
PDYNILPQND VNSASLERIG KAGSVMGWGC LYLFLVWALI LSESCKIGSY FYSGKAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-391716229171NO APICAL MERISTEM PROTEIN
1ut4_B3e-391716229171NO APICAL MERISTEM PROTEIN
1ut7_A3e-391716229171NO APICAL MERISTEM PROTEIN
1ut7_B3e-391716229171NO APICAL MERISTEM PROTEIN
3swm_A3e-391716232174NAC domain-containing protein 19
3swm_B3e-391716232174NAC domain-containing protein 19
3swm_C3e-391716232174NAC domain-containing protein 19
3swm_D3e-391716232174NAC domain-containing protein 19
3swp_A3e-391716232174NAC domain-containing protein 19
3swp_B3e-391716232174NAC domain-containing protein 19
3swp_C3e-391716232174NAC domain-containing protein 19
3swp_D3e-391716232174NAC domain-containing protein 19
4dul_A3e-391716229171NAC domain-containing protein 19
4dul_B3e-391716229171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125950.10.0NAC domain-containing protein 78-like
TrEMBLA0A2R6QAY10.0A0A2R6QAY1_ACTCH; NAC domain-containing protein
STRINGVIT_13s0019g05240.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-106NAC domain containing protein 53