PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00194
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 277aa    MW: 30017.2 Da    PI: 4.9461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00194genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13210256655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+    +++  + a++Le+AveY+k Lq
  AA9G00194 210 SIAERVRRTRISDRIRKLQELVPNM---DKQQTNTADMLEEAVEYVKVLQ 256
                689*********************8...899****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-15207266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12208260No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15209268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11210261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10210256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQSTSVGSSS GGGGGGGGGG DSGGGGGQLT RTGLSRIRSA PATWLEALLE EDEEDSLKPN  60
LGLTELLTGN SVSHETTTTT SRGSFEFPIP VDHGLYQQSG FHRQNSTPAD FLSGSGVGSD  120
GFYPNFGIPA NYDYLSPNID VSPGSKRARE MEALFSSPEF TSQMKGEQSS GQVPNTVSSA  180
MADMNMENLM EDSVAFRVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQQTN  240
TADMLEEAVE YVKVLQRQIQ ELTEEQKKCI CRPKEEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288460.11e-141transcription factor bHLH81
SwissprotQ9M0R01e-136BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A1J3GEI91e-140A0A1J3GEI9_NOCCA; Transcription factor bHLH81
STRINGXP_006288460.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-128bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]