PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA57G00047

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HSF

Protein Properties

Length: 985aa MW: 108209 Da PI: 6.1594

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA57G00047	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.7	1.3e-35	40	132	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++ ++sws +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i AA57G00047 40 FLSKTYDMVEDPATDAIVSWSPANNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKHLLKTIT 127 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + AA57G00047 128 RRKAA 132 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-39	30	124	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.5E-63	36	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.26E-35	37	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.4E-32	40	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	40	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	79	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:3.30.750.44	5.2E-34	597	684	No hit	No description
SuperFamily	SSF52096	8.95E-68	599	704	IPR029045	ClpP/crotonase-like domain
TIGRFAMs	TIGR00225	4.5E-90	638	956	IPR004447	C-terminal-processing peptidase S41A
SuperFamily	SSF50156	3.73E-18	651	777	IPR001478	PDZ domain
PROSITE profile	PS50106	12.767	668	756	IPR001478	PDZ domain
CDD	cd00988	7.93E-21	679	768	No hit	No description
SMART	SM00228	2.5E-13	680	757	IPR001478	PDZ domain
Pfam	PF00595	4.1E-9	681	753	IPR001478	PDZ domain
Gene3D	G3DSA:2.30.42.10	2.2E-20	685	766	IPR001478	PDZ domain
SMART	SM00245	1.6E-91	757	954	IPR005151	Tail specific protease
Gene3D	G3DSA:3.90.226.10	2.4E-52	767	958	IPR029045	ClpP/crotonase-like domain
SuperFamily	SSF52096	8.95E-68	784	958	IPR029045	ClpP/crotonase-like domain
CDD	cd07560	3.81E-75	789	954	No hit	No description
Pfam	PF03572	1.2E-48	790	951	IPR005151	Tail specific protease

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006508	Biological Process	proteolysis
GO:0005634	Cellular Component	nucleus
GO:0005739	Cellular Component	mitochondrion
GO:0009543	Cellular Component	chloroplast thylakoid lumen
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008236	Molecular Function	serine-type peptidase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MEGVTGGGVK SDEATTDEGI THSLPHPAAV QSGNTLPPPF LSKTYDMVED PATDAIVSWS 60 PANNSFVVWN PPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGRK 120 HLLKTITRRK AAQGHGTPQS QQSQSQGSMT VSSCVEVGKF GLKEEVEQLK RDKNVLMQEL 180 VKLRQQQQST DSHLQSMVKR LQGMEQRQQQ IMSFLAKAVQ NPTFLSQFIQ KQTDNIHVTE 240 TNKKRRLRED TAANTNHSST ASDGQIVKYQ PPRSDATKSM MWNIMKTNDK FPFLDDFSVH 300 GSSPNRVSGV TLQEMLPTTS GQSLAYAPVA LGQPPPYLPT TTSEQSTTYT PSDSVMPAVP 360 RMPQLTCDSI NDVSTENYMD TEDASGEFIS PSPFLDSSVP VQLDGIPEDP DIDELMSNCD 420 LFEEYLAQSP VLGDATTPEM NKTNGGQMDK LIEQLGLLTS DTEQFELDKE TEAGKLFSME 480 VLASSSLSPI FNINPNFSSK ESAIQVKLWL SHPPKLLKAS LLRFARSRSY RPRNNANPGL 540 VLYLFERNND RKIYGKVMMS SSVNFRKNIS VALVRIVSVM LVSSISVSTA NSPSWALSEE 600 NLLFLEAWRT IDRAYIDKSF NGQSWFRYRE TALRNEPMNT REETYKAIKK MVATLGDPFT 660 RFLEPQKFKS LRSGTQGALT GVGLSIGYPS ASDGASDGLV VISAAPGGPA KRAGVSSGDV 720 ILRIDNTTAE SLTIYDAAEM LQGPEGSTVE LAIRSGPETR FLSLTRERVS VNPVKSRLCE 780 IPGSGSNTPK IGYIKLTTFN QNASGAVKEA IETLRGNNVN AFVLDLRDNS GGSFPEGIEI 840 AKIWLDKGVI VYICDSRGVR DIYDTDGSSA IATSEPLAIL VNKGTASASE ILAGALKDNK 900 RALVYGESTY GKGKIQSVFQ LSDGSGLAVT VARYETPAHT DIDKVGVTPD HPLPQSFPKD 960 EEAFCKCLKD PAAACYLNQG MLFSR

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MEGVTGGGVK SDEATTDEGI THSLPHPAAV QSGNTLPPPF LSKTYDMVED PATDAIVSWS  60
PANNSFVVWN PPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGRK  120
HLLKTITRRK AAQGHGTPQS QQSQSQGSMT VSSCVEVGKF GLKEEVEQLK RDKNVLMQEL  180
VKLRQQQQST DSHLQSMVKR LQGMEQRQQQ IMSFLAKAVQ NPTFLSQFIQ KQTDNIHVTE  240
TNKKRRLRED TAANTNHSST ASDGQIVKYQ PPRSDATKSM MWNIMKTNDK FPFLDDFSVH  300
GSSPNRVSGV TLQEMLPTTS GQSLAYAPVA LGQPPPYLPT TTSEQSTTYT PSDSVMPAVP  360
RMPQLTCDSI NDVSTENYMD TEDASGEFIS PSPFLDSSVP VQLDGIPEDP DIDELMSNCD  420
LFEEYLAQSP VLGDATTPEM NKTNGGQMDK LIEQLGLLTS DTEQFELDKE TEAGKLFSME  480
VLASSSLSPI FNINPNFSSK ESAIQVKLWL SHPPKLLKAS LLRFARSRSY RPRNNANPGL  540
VLYLFERNND RKIYGKVMMS SSVNFRKNIS VALVRIVSVM LVSSISVSTA NSPSWALSEE  600
NLLFLEAWRT IDRAYIDKSF NGQSWFRYRE TALRNEPMNT REETYKAIKK MVATLGDPFT  660
RFLEPQKFKS LRSGTQGALT GVGLSIGYPS ASDGASDGLV VISAAPGGPA KRAGVSSGDV  720
ILRIDNTTAE SLTIYDAAEM LQGPEGSTVE LAIRSGPETR FLSLTRERVS VNPVKSRLCE  780
IPGSGSNTPK IGYIKLTTFN QNASGAVKEA IETLRGNNVN AFVLDLRDNS GGSFPEGIEI  840
AKIWLDKGVI VYICDSRGVR DIYDTDGSSA IATSEPLAIL VNKGTASASE ILAGALKDNK  900
RALVYGESTY GKGKIQSVFQ LSDGSGLAVT VARYETPAHT DIDKVGVTPD HPLPQSFPKD  960
EEAFCKCLKD PAAACYLNQG MLFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1fc6_A	1e-131	597	973	2	383	PHOTOSYSTEM II D1 PROTEASE
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. {ECO:0000250\|UniProtKB:O04073}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA57G00047

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024004724.1	0.0	carboxyl-terminal-processing peptidase 2, chloroplastic isoform X1
Swissprot	O23614	0.0	CTPA2_ARATH; Carboxyl-terminal-processing peptidase 2, chloroplastic
TrEMBL	D7M9G1	0.0	D7M9G1_ARALL; Uncharacterized protein
STRING	AT4G17740.1	0.0	(Arabidopsis thaliana)
STRING	fgenesh1_pm.C_scaffold_7001980	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11601	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	0.0	heat shock factor 1

Publications ? help Back to Top
Schubert M, et al. Proteome map of the chloroplast lumen of Arabidopsis thaliana. J. Biol. Chem., 2002. 277(10): p. 8354-65 [PMID:11719511] Sokolenko A, et al. The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. Curr. Genet., 2002. 41(5): p. 291-310 [PMID:12185496] Giacomelli L,Rudella A,van Wijk KJ High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol., 2006. 141(2): p. 685-701 [PMID:16648217] Tripathi LP,Sowdhamini R Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics, 2006. 7: p. 200 [PMID:16895613] Hall M, et al. Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function. Proteomics, 2010. 10(5): p. 987-1001 [PMID:20049866] Che Y, et al. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(40): p. 16247-52 [PMID:24043802]