PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA55G00011
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 540aa    MW: 60698.1 Da    PI: 6.7477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA55G00011genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.59.9e-056586223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                kC++C+  F ++ n++rHir+H
  AA55G00011 65 KCEKCSSEFCSPVNYRRHIRMH 86
                7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4116491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDLVKQDGND SLDMIIRRAV GKEPFLSFPK PENSPVQLFQ LLQAFDQPEL PGWPLLTPMK  60
IQMQKCEKCS SEFCSPVNYR RHIRMHRRLR KPNKDSGKER NALGAFWDKL PVDEAKEIVS  120
LNGMMLEEIP GSSVEMGLVT LVQKPGFTAL PQYYLRAGSD LLELFSILDD ASEKAFLCGT  180
DASMQKYIFD GETGKNVLEA KNVVASASFL LEQRLIKAWL ADKDAEALRC HKLLVEEEEA  240
ARRRQAELLE KKRRKKLRQR EQRVKDQKTE QQEHPKEGES STTTSEEHQD PTESSSQLSI  300
TSDSEAQRPD SLPIEDSSSL EELDVLETNN DANVGPQEIT GQVAYDQKRG GYRQNGSSKW  360
LAPGRSNGFH ANQAPHSSKF GNMVKNGTNR DNTRTTPTIT NPGKIWSRKA ENPKTVSSHD  420
TVVITQTKKS QVLIGSISVT IAKDGEHNQT EGSEDDGKAI IFEGSLTFDQ STVKIWRPVS  480
RQASDTEVNK NGVIESKLND NSHHKTLQQV ERGNSRGTCE IGFVSRIRDY YFKTKAMDET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241255RRRQAELLEKKRRKK
2249256EKKRRKKL
3250254KKRRK
4250255KKRRKK
5253259RKKLRQR
6254264KKLRQREQRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA55G00011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555670.10.0PREDICTED: uncharacterized protein LOC104825103
RefseqXP_010555671.10.0PREDICTED: uncharacterized protein LOC104825103
RefseqXP_010555672.10.0PREDICTED: uncharacterized protein LOC104825103
RefseqXP_010555673.10.0PREDICTED: uncharacterized protein LOC104825103
TrEMBLV4MP250.0V4MP25_EUTSA; Uncharacterized protein
STRINGXP_010555670.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-177C2H2-like zinc finger protein