PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA44G00703

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HRT-like

Protein Properties

Length: 468aa MW: 53147 Da PI: 9.795

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA44G00703	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	61.2	1.5e-19	271	301	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGviledGs C+++PvkgRKRC eHKG+Ri AA44G00703 271 VCGVILEDGSSCNETPVKGRKRCLEHKGQRI 301 7*****************************7 PP
2	HRT-like	50.9	2.6e-16	323	353	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil + +C+++Pv gRKRCe HKGmRi AA44G00703 323 ICGVILPNMKPCNNKPVSGRKRCEDHKGMRI 353 8*****************************7 PP
3	HRT-like	46.9	4.5e-15	438	467	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l + vC+++PvkgRKRCeeHKGmRi AA44G00703 438 TCGVKLYN-RVCEKTPVKGRKRCEEHKGMRI 467 7****9.8******************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGYGDGVPFV VVPTVFKRED YKRTKHDAVF SKWQILIGSK DWEDFKEGKD GVGRYRVQNL 60 PTKSFPGLYE LGVAVINQDQ SRKLEADDVL ASYLGQAENV RSRLQSYGRS GAHLRNVNLI 120 HYNETIESPE KKAVTLGLFE DIFSKGGSIL YRWAPMRSKR EAEATEGMLL CTFDYAWNKG 180 SNGERRQLDL LQKLGNGEFM SQRKPGISRV LFPFLKNQVG IKIKGEKHVL KEERKLSCNV 240 DEVKSNFITS ILKFTKSKPQ QVSDKLDSGS VCGVILEDGS SCNETPVKGR KRCLEHKGQR 300 ICRVSPQKQR SRKLEILTDS DVICGVILPN MKPCNNKPVS GRKRCEDHKG MRINAFLFLL 360 NSQDLNKTIK DEKSETVTTH SEVNEEPLIR FCEAITKSGL PCTRNSPKES KRCWQHREKT 420 SDEQSLEVLS PVAVKEVTCG VKLYNRVCEK TPVKGRKRCE EHKGMRII

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGYGDGVPFV VVPTVFKRED YKRTKHDAVF SKWQILIGSK DWEDFKEGKD GVGRYRVQNL  60
PTKSFPGLYE LGVAVINQDQ SRKLEADDVL ASYLGQAENV RSRLQSYGRS GAHLRNVNLI  120
HYNETIESPE KKAVTLGLFE DIFSKGGSIL YRWAPMRSKR EAEATEGMLL CTFDYAWNKG  180
SNGERRQLDL LQKLGNGEFM SQRKPGISRV LFPFLKNQVG IKIKGEKHVL KEERKLSCNV  240
DEVKSNFITS ILKFTKSKPQ QVSDKLDSGS VCGVILEDGS SCNETPVKGR KRCLEHKGQR  300
ICRVSPQKQR SRKLEILTDS DVICGVILPN MKPCNNKPVS GRKRCEDHKG MRINAFLFLL  360
NSQDLNKTIK DEKSETVTTH SEVNEEPLIR FCEAITKSGL PCTRNSPKES KRCWQHREKT  420
SDEQSLEVLS PVAVKEVTCG VKLYNRVCEK TPVKGRKRCE EHKGMRII

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA44G00703

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_200489.2	0.0	effector of transcription2
Refseq	XP_002866167.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A178URY3	0.0	A0A178URY3_ARATH; ET2
TrEMBL	D7MM69	0.0	D7MM69_ARALL; Uncharacterized protein
STRING	AT5G56780.1	0.0	(Arabidopsis thaliana)
STRING	scaffold_802235.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2