PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00382

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 470aa MW: 54472.9 Da PI: 5.0862

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00382	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ew+fFs+rd+ky++g+r+nratk gyWkatgkd++v k+ AA40G00382 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWFFFSPRDRKYPNGSRTNRATKGGYWKATGKDRQVSG-KD 102 79**************************.99***********6345667999********************************99.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl AA40G00382 103 RTIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.421	6	157	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWFFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRQVSG KDRTIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLHETECEP TANGMQDTYA LCRVFKKVVI EAKPREQHQQ SSLYANANSN 180 ISGNSSFDCS DLEISSTTGQ VLSYSNTSVS LPRFENANAI SDHNDWSQYL TQDMPPSFSN 240 YISPCGPYLT QSKVNNEIEC SMLQYQMPLA PLRIEKSPIR NGDWMHKNSV QSGLDDFSFV 300 ASNSNNFYDN NVGDHLIHIG NCDEQLLNIE NGFMEEQEIL PSFFDNNDQD LEFYDKSHTN 360 TINNIEINDF LMFDNQEEEI DNSNITLDSS EIEEIHEEIR VNPKMLISTR QATEVLYYKI 420 INSQIHKVHV ISIEERAMLM EESRDSWFRK VENVAKTKLK QYYKFLTIIF

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWFFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRQVSG KDRTIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLHETECEP TANGMQDTYA LCRVFKKVVI EAKPREQHQQ SSLYANANSN  180
ISGNSSFDCS DLEISSTTGQ VLSYSNTSVS LPRFENANAI SDHNDWSQYL TQDMPPSFSN  240
YISPCGPYLT QSKVNNEIEC SMLQYQMPLA PLRIEKSPIR NGDWMHKNSV QSGLDDFSFV  300
ASNSNNFYDN NVGDHLIHIG NCDEQLLNIE NGFMEEQEIL PSFFDNNDQD LEFYDKSHTN  360
TINNIEINDF LMFDNQEEEI DNSNITLDSS EIEEIHEEIR VNPKMLISTR QATEVLYYKI  420
INSQIHKVHV ISIEERAMLM EESRDSWFRK VENVAKTKLK QYYKFLTIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-55	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00382

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400258.1	0.0	NAC domain-containing protein 86
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	V4N7S3	0.0	V4N7S3_EUTSA; Uncharacterized protein
STRING	XP_006400258.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]