PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA37G00186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25372.9 Da PI: 7.4487 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.2 | 5.2e-24 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie +s rqvtfskRr+g++KKA+EL++LC++eva+i+fs+ +k + + AA37G00186 19 KIEKESHRQVTFSKRRAGLFKKASELCTLCGVEVAIIVFSPANKPFSF 66 69***************************************9997766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-34 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-28 | 10 | 92 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.273 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.51E-35 | 11 | 78 | No hit | No description |
PRINTS | PR00404 | 1.9E-18 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-27 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MRWKKKGGSM GRQRIPMAKI EKESHRQVTF SKRRAGLFKK ASELCTLCGV EVAIIVFSPA 60 NKPFSFAHPN LDSVLDHYII SPNNPYYYST HDIDSTTEAE GRNTTRSSCE LNVVLTQVLS 120 ELEEEKKKGQ AMEEMRKLGR MKQWWEAPIE EMNLVDLQQM KLALGELRNA VAFAQQSLEN 180 NMAFFNYGDN KQEDDFNLMD NKPLPPSYIS STFPNTCNFP Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 10 | 78 | 1 | 69 | MEF2C |
5f28_B | 1e-17 | 10 | 78 | 1 | 69 | MEF2C |
5f28_C | 1e-17 | 10 | 78 | 1 | 69 | MEF2C |
5f28_D | 1e-17 | 10 | 78 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA37G00186 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405049.1 | 3e-75 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-71 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | V4LVK6 | 7e-74 | V4LVK6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405049.1 | 1e-74 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-74 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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