PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA37G00019

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 266aa MW: 30704.8 Da PI: 9.6132

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA37G00019	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.4	9.6e-12	140	240	3	93
EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SEE CS B3 3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.sef 90 k+lt sdv + +rlvl kk +++ + + ee++++ ++ ++g ++++k+++ +++++ vlt+GW eFv++ng + Df+++ + +r +++ AA37G00019 140 KQLTESDVCVNqKRLVLGKKEVKDKflsrlkddDVPGEEGVDVLVYGPDGTVYDMKFKI-RNKNTLVLTNGWIEFVQDNGFRkYSDFLTIWMFKRsEDG 237 78999998655599******9999999999855556899************65.55579**************977999998766665777 PP ..E CS B3 91 elv 93 + + AA37G00019 238 KIC 240 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	2.88E-14	136	243	No hit	No description
SuperFamily	SSF101936	2.94E-12	137	243	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-13	137	248	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0095	138	243	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.46	139	247	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.9E-8	140	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMKAKDNSSD KLQEEKNNSS DEFKQENNNS SDDQNDNSSD DELSEKDITS SDPKAASAIK 60 KRKSPIKKRK AVMIKNSKQE VVTKKQKIVE EEEDDTEATL QLLKSRNKKG DKEIPPGRIR 120 TKIPDPESLS SSFYSKCIYK QLTESDVCVN QKRLVLGKKE VKDKFLSRLK DDDVPGEEGV 180 DVLVYGPDGT VYDMKFKIRN KNTLVLTNGW IEFVQDNGFR KYSDFLTIWM FKRSEDGKIC 240 FVIDSNRYKD ITKPVSKRIL KRVFKY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA37G00019

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	1e-20	B3 family protein