PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00055
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 166aa    MW: 18260.5 Da    PI: 10.3533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00055genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1980138155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr+ +  +g    +r r +lg+f +aeeAa a+++a+ +l g
  AA31G00055  80 KKFRGVRQRP-WGKWAAEIRCSRGsRGyrkgQRDRLWLGTFNSAEEAALAYDNAAIQLIG 138
                 59********.**********666688975555**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.0E-331164IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.09E-2380145No hitNo description
Gene3DG3DSA:3.30.730.103.6E-2681145IPR001471AP2/ERF domain
PROSITE profilePS5103220.75881146IPR001471AP2/ERF domain
SMARTSM003801.9E-3081152IPR001471AP2/ERF domain
PfamPF008474.1E-1481138IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1881146IPR016177DNA-binding domain
PRINTSPR003671.8E-108293IPR001471AP2/ERF domain
PRINTSPR003671.8E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSE EEEMQCGGSS SPSRRRGKRL VKEIVINPSD DSDSDIESSK  60
KRFKIRIPAD FLTATTTGRK KFRGVRQRPW GKWAAEIRCS RGSRGYRKGQ RDRLWLGTFN  120
SAEEAALAYD NAAIQLIGPH APTNFGFPTE IQVPVDAGVS AAAPGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15811531477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618155.16e-73PREDICTED: ethylene-responsive transcription factor ERF070
SwissprotQ9C9952e-70ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3APU11e-71A0A0D3APU1_BRAOL; Uncharacterized protein
STRINGBostr.10273s0232.1.p3e-73(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.17e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]