PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | GRF | ||||||||
Protein Properties | Length: 477aa MW: 52262.8 Da PI: 8.7035 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.6 | 1.3e-24 | 172 | 215 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e AA30G00283 172 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 215 79***************************************998 PP | |||||||
2 | QLQ | 54.6 | 3.2e-19 | 115 | 151 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll+ i+k AA30G00283 115 GPFTLTQWAELEQQALIYKYITANVPVPSSLLLSIKK 151 59*******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-11 | 115 | 151 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.676 | 116 | 151 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.3E-13 | 116 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 172 | 216 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-21 | 173 | 215 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MDIGLHIPES NENSSLSQRE LRSTEYCKTM SFHQNMRSAS EQMLSFSSSS DKHEAFDFTK 60 FVGLDNTNNN NKTSFSPFLH QIPSSYCKNS GGGGGYGYGY GYGGLMNTSL TGVKGPFTLT 120 QWAELEQQAL IYKYITANVP VPSSLLLSIK KAFYPYVGWG GFHLGFSGGN MDPEPGRCRR 180 TDGKKWRCSR DAVPDQKYCE RHINRGRHRS RKPVEGHSGH TLSNKVIKPP IAAIAAAQQQ 240 HNLLADSITN RVGNSRGRSI VPTTINTQRQ QQQQQQSKES SPVLVPIHQK QRNIEFGHIS 300 SDSLLNPSHK TPSSLSLSSS SYLDFTNNTT QQDHLKSDWT QLSISTPHHH NNINNNNKLL 360 LSPLRLSREF DDETTTTLEP TNWIPISWGN SNSNSLGGPL GEVLNSTTNS PTGVLQNSTF 420 CSLSNSSSVS SPVCGGTENK NNGDDLLGSS AATGTTLLCS SSSVTVERNG NHFPFAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00283 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU550473 | 4e-34 | EU550473.1 Arabidopsis thaliana isolate CS6714 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550474 | 4e-34 | EU550474.1 Arabidopsis thaliana isolate CS6732 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550475 | 4e-34 | EU550475.1 Arabidopsis thaliana isolate CS6751 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550476 | 4e-34 | EU550476.1 Arabidopsis thaliana isolate CS6781 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550477 | 4e-34 | EU550477.1 Arabidopsis thaliana isolate CS6796 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550478 | 4e-34 | EU550478.1 Arabidopsis thaliana isolate CS6797 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550479 | 4e-34 | EU550479.1 Arabidopsis thaliana isolate CS6799 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550480 | 4e-34 | EU550480.1 Arabidopsis thaliana isolate CS902 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550481 | 4e-34 | EU550481.1 Arabidopsis thaliana isolate CS6810 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550482 | 4e-34 | EU550482.1 Arabidopsis thaliana isolate CS6824 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550483 | 4e-34 | EU550483.1 Arabidopsis thaliana isolate CS6885 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550484 | 4e-34 | EU550484.1 Arabidopsis thaliana isolate CS6896 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550485 | 4e-34 | EU550485.1 Arabidopsis thaliana isolate CS6922 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550486 | 4e-34 | EU550486.1 Arabidopsis thaliana isolate CS906 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550487 | 4e-34 | EU550487.1 Arabidopsis thaliana isolate CS931 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550488 | 4e-34 | EU550488.1 Arabidopsis thaliana isolate CS1602 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550489 | 4e-34 | EU550489.1 Arabidopsis thaliana isolate CS6182 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550490 | 4e-34 | EU550490.1 Arabidopsis thaliana isolate CS6603 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550491 | 4e-34 | EU550491.1 Arabidopsis thaliana isolate CS6608 GRL2 (GRL2) gene, partial cds. | |||
GenBank | EU550492 | 4e-34 | EU550492.1 Arabidopsis thaliana isolate CS6626 GRL2 (GRL2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548469.1 | 1e-136 | PREDICTED: growth-regulating factor 1-like | ||||
Swissprot | Q8L8A8 | 1e-136 | GRF2_ARATH; Growth-regulating factor 2 | ||||
TrEMBL | A0A178UXW8 | 1e-134 | A0A178UXW8_ARATH; GRF2 | ||||
TrEMBL | V4MKR3 | 1e-134 | V4MKR3_EUTSA; Uncharacterized protein | ||||
STRING | XP_010548469.1 | 1e-135 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-108 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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