PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00100

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 523aa MW: 58777.2 Da PI: 7.8704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00100	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AA26G00100 111 FVCEICNKGFQRDQNLQLHRRGH 133 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	110	133	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.68E-6	110	133	No hit	No description
PROSITE profile	PS50157	10.949	111	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	153	183	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.68E-6	183	208	No hit	No description
SMART	SM00355	230	188	208	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MNKDMLLHHQ NNHQNNNNNQ QQEENMSNLT STASGDQTSV NSSGNRTEAS GSNYFPLNNI 60 NQQHQEQEQE HFFVQESLQP QKKRRNQPGN PDPESEVIAL SPKTLMATNR FVCEICNKGF 120 QRDQNLQLHR RGHNLPWKLK QRSNKEVIRK KVYVCPEPNC VHHEASRALG DLTGIKKHFC 180 RKHGEKKWKC DKCSKKYAVL SDCKAHSKTC GTKEYRCDCG TLFSRRDSFI THRAFCEALA 240 EESAREVITP NHQKQHHDDH HQHHDHDQTQ PNINVSSSST SQNIINFQST NNNDGNNTSH 300 HHHSFTMKQE QQTNDHHHHH HNHDHMINYN TIPPWLAPPP QSSDCFPHTS SNPNPNVRTT 360 PSLFSHQHQH HHSPAPAIAA TALLQKAAQM GPTKSNPLPP SSSSHHHNNL TTTMAAMMTS 420 SSSNNLGLFH QDHYAFDQNG SGESFDDTFG GFLRTTNANA TATNASNAGD TNNKNGGSGG 480 EGLTRDFLGL RPLMSHNEIL SFADLGNCIN TSAPNHSQKP WQG

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MNKDMLLHHQ NNHQNNNNNQ QQEENMSNLT STASGDQTSV NSSGNRTEAS GSNYFPLNNI  60
NQQHQEQEQE HFFVQESLQP QKKRRNQPGN PDPESEVIAL SPKTLMATNR FVCEICNKGF  120
QRDQNLQLHR RGHNLPWKLK QRSNKEVIRK KVYVCPEPNC VHHEASRALG DLTGIKKHFC  180
RKHGEKKWKC DKCSKKYAVL SDCKAHSKTC GTKEYRCDCG TLFSRRDSFI THRAFCEALA  240
EESAREVITP NHQKQHHDDH HQHHDHDQTQ PNINVSSSST SQNIINFQST NNNDGNNTSH  300
HHHSFTMKQE QQTNDHHHHH HNHDHMINYN TIPPWLAPPP QSSDCFPHTS SNPNPNVRTT  360
PSLFSHQHQH HHSPAPAIAA TALLQKAAQM GPTKSNPLPP SSSSHHHNNL TTTMAAMMTS  420
SSSNNLGLFH QDHYAFDQNG SGESFDDTFG GFLRTTNANA TATNASNAGD TNNKNGGSGG  480
EGLTRDFLGL RPLMSHNEIL SFADLGNCIN TSAPNHSQKP WQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-31	184	245	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-31	184	245	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	150	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00355	DAP	Transfer from AT3G13810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010501280.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X2
Refseq	XP_010501294.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X3
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
TrEMBL	A0A1J3JPP2	0.0	A0A1J3JPP2_NOCCA; Protein indeterminate-domain 11
STRING	XP_010501262.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-121	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]