PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA1G00066

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB_related

Protein Properties

Length: 292aa MW: 32826 Da PI: 8.8762

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA1G00066	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.6e-14	77	121	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky AA1G00066 77 RENWTEQEHDKFLEALHLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 121 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-16	71	127	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.098	72	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-7	74	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	75	124	IPR006447	Myb domain, plants
SMART	SM00717	4.4E-11	76	124	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-11	77	121	IPR001005	SANT/Myb domain
CDD	cd00167	7.53E-9	79	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVSVNPSPAH CYTSSFDLMN MSLPGFNSIP HTAAPVTEGF GVSTIATMPV NVRNNTMSFF 60 EDPTKKIRKP YTIKKSRENW TEQEHDKFLE ALHLFDRDWK KIEAFIGSKT VIQIRSHAQK 120 YFLKVQKSGT NEHLPPPRPK RKATHPYPQK APKTVAFTSP AIGSLPSENV LLESEFLYTT 180 DSHSLPPNTA ASTSRLPHHP INTQKSLIKE ESENCCSTSG TRDKQRTRTV TETNDQESSE 240 TPQRVMPNFA EVYSFIGSVF DPNTSGHVQR LKQMDPINLE TVCQQTSSIN FG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA1G00066

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418431.1	1e-135	protein REVEILLE 3
Swissprot	Q6R0H0	1e-130	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	V4KZJ0	1e-134	V4KZJ0_EUTSA; Uncharacterized protein
TrEMBL	V4LAJ1	1e-134	V4LAJ1_EUTSA; Uncharacterized protein
STRING	XP_006418431.1	1e-134	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-132	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]