PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00128
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YA
Protein Properties Length: 199aa    MW: 22167.6 Da    PI: 8.6649
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA865.6e-27106156158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQy++Il+RRq+Rakle++       ++py+heSRh hA+rRpRg+gGrF
  AA18G00128 106 EEPVFVNAKQYHGILRRRQSRAKLESR-------NRPYMHESRHLHAVRRPRGCGGRF 156
                 69***********************93.......467********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-29104159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115228.694105159IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-22107156IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860110130IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTSSIHELSD NVVSNEKQER PDSQTQPQIP SGPSSESIHK NLVFSEPLPQ RGSAQSLALG  60
LYPYPDPYYR SIFAPQCDTQ PYPPHPYPGI LGMQQQGVPL PSDAVEEPVF VNAKQYHGIL  120
RRRQSRAKLE SRNRPYMHES RHLHAVRRPR GCGGRFLNVK KNGEHQEEAN SDENTSETHS  180
SLRSEKSAMA AAGSPSGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-16105162164NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850235.14e-92nuclear factor Y, subunit A4
SwissprotQ8VY643e-93NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A178VWS58e-91A0A178VWS5_ARATH; NF-YA4
STRINGAT2G34720.11e-91(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-95nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]