PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00096
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 267aa    MW: 31601.7 Da    PI: 5.1888
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00096genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36231152103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei+ed++++e++sw++ g+sfvv+d ++f++++Lp++Fkhsnf+SFvRQLn+YgF+k++ e+         weF+++ F  g+k+ll++ik
    AA18G00096  23 FLTKTYEIVEDPRTDEIVSWNRGGTSFVVWDLNSFSTSLLPTHFKHSNFSSFVRQLNTYGFRKIEAER---------WEFANEGFLMGQKRLLKNIK 110
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
    AA18G00096 111 RRSSS 115
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5619112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-3719112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
PNQENGEVPQ PLEDLHEFGP PPFLTKTYEI VEDPRTDEIV SWNRGGTSFV VWDLNSFSTS  60
LLPTHFKHSN FSSFVRQLNT YGFRKIEAER WEFANEGFLM GQKRLLKNIK RRSSSSSSIN  120
HQSSINEVTL LRKQRQMLIM ELVKLRQHQQ NTLSYIKTME TRLKEAEKKQ RHMMSFLAKA  180
MQNPCFLYQL LEQRDKRKEL EESVKRKREI KEETVEYLSE LEALAMEIQG YGRQVQSLQT  240
VVEEEEEEVL DDGFWEELLS DEKTEEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-251911713125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638472.11e-117heat stress transcription factor A-7a
SwissprotQ9SV121e-110HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLD7LTZ91e-111D7LTZ9_ARALL; AT-HSFA7A
STRINGCagra.1043s0019.1.p1e-118(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.12e-99heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]