PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00203
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 214aa    MW: 24528.9 Da    PI: 10.1952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00203genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-104995455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 h  +E++RR+++ + f  L  llP +     kK +K++iL  A+  +k+Lq
  AA12G00203 49 EHVLAEKKRRQKLSQLFIALSALLPGL-----KKAEKVSILDYAISRMKQLQ 95
                5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2684594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-84995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1349111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-85099No hitNo description
SuperFamilySSF474597.33E-1450107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-951100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNKKPPLISL DFSSNVVLEE INDGFIQQET KRKTCSSART RRCSIIAKEH VLAEKKRRQK  60
LSQLFIALSA LLPGLKKAEK VSILDYAISR MKQLQENIKK LKEEKEASKE IESTIIVKKS  120
KLFIENESFL SSSLSKNEQF DQTTLPEIET KVFQNQVLIK IHCKKTKGCI SKILNYCVTI  180
WNSILDITIV AKIEEDFSVN TLKDVVRKLR LAMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459KKRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00203
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472272.11e-76PREDICTED: transcription factor bHLH19-like isoform X1
SwissprotQ1PF161e-73BH019_ARATH; Transcription factor bHLH19
TrEMBLV4LUM22e-74V4LUM2_EUTSA; Uncharacterized protein
STRINGXP_010472272.15e-76(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]