PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA10G00315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HSF | ||||||||
Protein Properties | Length: 491aa MW: 54248.6 Da PI: 4.8353 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.8 | 1.3e-36 | 27 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k++l++i AA10G00315 27 FLSKTYDMVDDPSTNDVVSWSSGNNSFVVWNVPEFAKEFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQMLKNIV 114 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k AA10G00315 115 RRKP 118 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-39 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-35 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-59 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-31 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MGSICESVAT VNSSSSSSAV LSSVPPFLSK TYDMVDDPST NDVVSWSSGN NSFVVWNVPE 60 FAKEFLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKQML KNIVRRKPAQ 120 VQTPQQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QVTEHHLQNV 180 GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ LVQQNNEDGS NQHIPGSNKK RRLPGEDQII 240 SNGYGTNGLS QQIVKYQSSM NDAANSMLSQ IQKMSSLPKN ESLSNNHGSF LLRDVHSSNS 300 PDNGSSLTGV SGVTSADVSP NPALSYMSLP PEMKFQNSSI ANKILETNLP HLQADLLAPQ 360 QAAVTSGSPT SDLVGCEMDN GECLDPIMAV LDGSMELETD AISPEQDFNE LLGLNGVPKL 420 SGIQDSFWEQ FLAASPVIGD TDDLISGSVD NDLVLEQLEL QSNLRNVWTK SQQMNHLTEQ 480 MGLLTSDAQR K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-28 | 17 | 116 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-28 | 17 | 116 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-28 | 17 | 116 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00328 | DAP | Transfer from AT3G02990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA10G00315 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408356.1 | 0.0 | heat stress transcription factor A-1e | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | V4M117 | 0.0 | V4M117_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408356.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
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