PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00295

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 485aa MW: 56276.5 Da PI: 5.073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00295	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v ++ AA10G00295 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLIPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RD 102 79**************************.99***********6346677999*********************************9.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl AA10G00295 103 RAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.043	6	157	IPR003441	NAC domain
Pfam	PF02365	7.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLIPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDENECQP SAFGMQDAYA LCRVFKKIVI EAKPRDQIFQ RQHQSYVNTT 180 SNLSGNCSSN FDVCSDLEIS SNTHQVQNAV QTQFGNQRFK SNAIGDEDWS QYYGASYGTY 240 PTPSPFKVNT EIECNMLQYN TSQPPLRVEN SAISDCDFFS RMNQNSDYSG LEEFTFAAIN 300 TNNYNNIDDQ VIHIGNFDEQ FMLPNHHTNQ EFIEGQIISN LDDNHQDLEF HGDNIDSNIE 360 IDDFFSFDNY HEENIIKHED KETVDAKETL LNSSGLEVGT EEIRFSNRML ISTYQTAKIL 420 YHQVVPSHTL KVQMNPNVYN VEERTLLIEE DKDSWFQRAG KITKTKLTFL SLIAQQYYQS 480 VAIFF

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLIPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDENECQP SAFGMQDAYA LCRVFKKIVI EAKPRDQIFQ RQHQSYVNTT  180
SNLSGNCSSN FDVCSDLEIS SNTHQVQNAV QTQFGNQRFK SNAIGDEDWS QYYGASYGTY  240
PTPSPFKVNT EIECNMLQYN TSQPPLRVEN SAISDCDFFS RMNQNSDYSG LEEFTFAAIN  300
TNNYNNIDDQ VIHIGNFDEQ FMLPNHHTNQ EFIEGQIISN LDDNHQDLEF HGDNIDSNIE  360
IDDFFSFDNY HEENIIKHED KETVDAKETL LNSSGLEVGT EEIRFSNRML ISTYQTAKIL  420
YHQVVPSHTL KVQMNPNVYN VEERTLLIEE DKDSWFQRAG KITKTKLTFL SLIAQQYYQS  480
VAIFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	4	157	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	4	157	18	168	NAC domain-containing protein 19
3swm_B	4e-55	4	157	18	168	NAC domain-containing protein 19
3swm_C	4e-55	4	157	18	168	NAC domain-containing protein 19
3swm_D	4e-55	4	157	18	168	NAC domain-containing protein 19
3swp_A	4e-55	4	157	18	168	NAC domain-containing protein 19
3swp_B	4e-55	4	157	18	168	NAC domain-containing protein 19
3swp_C	4e-55	4	157	18	168	NAC domain-containing protein 19
3swp_D	4e-55	4	157	18	168	NAC domain-containing protein 19
4dul_A	4e-55	4	157	15	165	NAC domain-containing protein 19
4dul_B	4e-55	4	157	15	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00295

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507160.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	V4MBE5	0.0	V4MBE5_EUTSA; Uncharacterized protein
STRING	XP_010507160.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]