PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

99518

Common Name

SELMODRAFT_99518, SUPa-1

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 141aa MW: 14768.2 Da PI: 7.9148

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
99518	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H 99518 44 YSCSFCAREFRTAQALGGHMNVH 66 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.68E-7	41	73	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-5	42	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.801	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MAWKSHHQRA AAPGAAAVDH ESWEVRAFAE DAASCSEQWP PRSYSCSFCA REFRTAQALG 60 GHMNVHRRER AYANQLGLLR SSTNNPASAS APGDSSTSAA APALGLCWLY PVPAPANGTG 120 VCHQVPTTST VTTTSPQNSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	5e-13	39	66	2	29	superman protein
2l1o_A	5e-13	39	66	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973706.2	3e-97	transcriptional regulator SUPERMAN
TrEMBL	D8RRA5	3e-97	D8RRA5_SELML; EPF-type Cis2-His2 zinc finger transcription factor
STRING	EFJ25366	5e-98	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP576	15	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	99518
Entrez Gene	9642617

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]