PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 893532
Common NameARALYDRAFT_893532
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 314aa    MW: 36947.4 Da    PI: 8.8038
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
893532genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.3e-141712910128
     NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111
             +de ++++yLk+ + + +   +++i+++++++ +P      +  +++++ f + + +++a gk      +sg W+  g+dk ++sk +g+  g kk+L f k+
  893532  17 EDEVIISRYLKRMIVNGDSWPANFIEDANVFNKNPYVE---F--DSDSTSFVIVKPRTEACGKTDG--CESGCWRIIGRDKLIKSKaTGKILGFKKILKFCKK 112
             68899********87777555489***********632...2..3344556666666666665444..479**************988889************ PP

     NAM 112 rapkgektdWvmheyrl 128
             ++p+  k +Wvm+eyrl
  893532 113 TKPREYKRSWVMEEYRL 129
             ***************98 PP
2NAM27.58.9e-0918829917128
     NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek....ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy..... 109
             +y  k ++++ ++      + ++y ++P +L    +  ek     +  F+++        ++ r + + gyWk   +d+++++ +  ++g k+ + f      
  893532 188 FYCVKIMSSEGNDW-PSYVTNNVYCLHPLELV-DPQD-EKfqrfGICIFANKT-------KAIRdKCDGGYWKLLRHDRPIKA-EFGTIGYKRLFEFCeteke 279
             45444455555555.33556689999999995.2222.222011333444333.......334446789**************.8889**********65543 PP

     NAM 110 .kgrapkgektdWvmheyrl 128
               +r+ k +k +W+++eyrl
  893532 280 eYARNGKDVKVTWTIEEYRL 299
             2245666679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.4488147IPR003441NAC domain
SuperFamilySSF1019413.92E-2717146IPR003441NAC domain
PfamPF023653.8E-917129IPR003441NAC domain
SuperFamilySSF1019418.24E-26158312IPR003441NAC domain
PROSITE profilePS5100518.408172313IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEVSAYDRIK AELLNAEDEV IISRYLKRMI VNGDSWPANF IEDANVFNKN PYVEFDSDST  60
SFVIVKPRTE ACGKTDGCES GCWRIIGRDK LIKSKATGKI LGFKKILKFC KKTKPREYKR  120
SWVMEEYRLT NNLNWKQDHV ICKIRFLFEA EISFLLTKHF YTTSKSPLRN ELLPAYGFYS  180
NEQENDEFYC VKIMSSEGND WPSYVTNNVY CLHPLELVDP QDEKFQRFGI CIFANKTKAI  240
RDKCDGGYWK LLRHDRPIKA EFGTIGYKRL FEFCETEKEE YARNGKDVKV TWTIEEYRLS  300
KNVKRNRFLC VIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap893532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888152.10.0NAC domain-containing protein 53
TrEMBLD7KXC20.0D7KXC2_ARALL; Uncharacterized protein
STRINGscaffold_200606.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-157NAC family protein