PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 891632 | ||||||||
Common Name | ARALYDRAFT_891632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 83aa MW: 9354.61 Da PI: 8.2836 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 9.1e-11 | 57 | 81 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck G++CkF H+ 891632 57 DQAICPHYSRFGICKSGPTCKFDHS 81 6899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.976 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.13 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-7 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-4 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-8 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 60 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MSDGNFPERP GEPECSYYLR TGNCYLKQNC KYHHPKNITP REPPCPLNDK GLPLRPDQAI 60 CPHYSRFGIC KSGPTCKFDH ST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 891632 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023673 | 1e-106 | AC023673.3 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-106 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891416.1 | 4e-55 | zinc finger CCCH domain-containing protein 13 | ||||
Swissprot | Q3ECU8 | 4e-49 | C3H13_ARATH; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | D7KC26 | 8e-54 | D7KC26_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | scaffold_104426.1 | 1e-54 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48195.1 | 2e-51 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 891632 |
Entrez Gene | 9330161 |