PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 884150
Common NameARALYDRAFT_683594
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 1361aa    MW: 153343 Da    PI: 5.5667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
884150genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-2911701228259
              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
               D + WrKYGqK++kgs++pr+YY+Cts+ gC+++k++ers++dp++++itY  eHnh+
  884150 1170 ADLWVWRKYGQKPIKGSPYPRNYYKCTSSkGCSARKQIERSRTDPNMLVITYITEHNHP 1228
              799************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.94E-58102IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015824.8E-515100IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525409.34E-48131395IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.2E-27160404IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3007.5E-10167290IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.7E-23169184No hitNo description
PRINTSPR003642.7E-23242256No hitNo description
PRINTSPR003642.7E-23335349No hitNo description
SuperFamilySSF467852.99E-11375472IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.7E-30507824IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.2E-28511822IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077259.2E-9575594IPR011713Leucine-rich repeat 3
PRINTSPR003642.7E-23749765No hitNo description
SuperFamilySSF467854.08E-610341118IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5081131.3311641230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-2911661230IPR003657WRKY domain
SuperFamilySSF1182901.03E-2411681230IPR003657WRKY domain
SMARTSM007742.9E-3511691229IPR003657WRKY domain
PfamPF031064.3E-2411711228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005774Cellular Componentvacuolar membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1361 aa     Download sequence    Send to blast
MADSEQLVCI SCVSEVRYSF VSHLSEALRR KGISSVIIDV DSDDLLSKES QAKIEISRVS  60
VMVLSRICEP TRVCQNFVNV IECQRNKNQV VVPVLYGESP LLGEWLSVLD LRDLSPVHQS  120
RKDCSDSQFV KEIVRDVYEK LFYKGRIGIY SKLLEIEKMV CKQPLGIRCV GIWGMPGIGK  180
TTLAKAVFDQ MSGEFDASCF IEDYSKAIQE KGVYCLLEEQ FLKENAGGAG GTVTKLSLLR  240
NKLNNKRVLV VLDDVRSPLV VESFLGGFDW FGPKSLIIIT SRDKQVFRLC RVDQIYEVLG  300
LNEKEALQLF SFCASIDDMA EQSLHEVSMK VVKYASGHPL ALSLYGRELK GKKTLPEMET  360
TFLELKEHPP TMFVDAIKSC YDTLNDREKN IFLDIACFFE GENVDYVMQL LEGCGFFPHV  420
GIDVLVEKCL VTITENQVRM HNLIQNVGRQ IINRETRQTK RRDRLWEPWS IKYLLEDNGE  480
KENGEHKTTL ERAQGPEEIE GMFLDTSNFS FDIKPAAFDN MLNLRLLKIY SSNPEVHHVK  540
NFLKGSLNSL PNELRLLHWE NYPLQFLPQN FDPIHLVEIN MPYSQLKKLW GGTKNLEMLK  600
TIRLCHSQQL VDIDDVLKAQ NLEVIDLQGC TRLQSFPATG QLLHLRTVNL SGCTEIKSFP  660
EIPPNIETLN LQGTGIIELP LSIIKPNYTE LLNLLAEIPG LSGVSNLEQS DLKPLTSLMK  720
MSTSNQNLGK LICLELKDCA RLRSLPNMNN LELLKVLDLS GCSELETIQG FPQNLKELYL  780
AGTAVRQVPQ LPQSLELFNA HGCVSLKSIR VDFEKLPVHY TLSNCFDLCP KVVSDFLVQA  840
LANAKRIPRE HQQELNKTLA FSFCAPSHAN QNSKLDLQLG SSVMTRLNPS WRNTLVGFAM  900
LVEVAFSEDY YDATGFGISC VCKWKNKEGH SHRIERNLHC WALGKAVQKD HMFVFCDDNL  960
RPSTDEGIDP DIWADLVVFE FFPVNNQTRL LGDSCTVTRC GVRVITPPNC NTSLEISSSV  1020
LSLDPMEVSG NEGEEVLRVS YDGLQEIDKA LFLYLAGLFN DEDVDLVAPL IANSIDMDVS  1080
YGLKVLADRS LIRVSSNGEI VMYNLQQEMG KEILHTESKK TDRLVDNSQS SMIDSKEIEI  1140
THSKNRRKKS RAKKVVRVLD PGSRSSEEVA DLWVWRKYGQ KPIKGSPYPR NYYKCTSSKG  1200
CSARKQIERS RTDPNMLVIT YITEHNHPSP TQRNALAGST HSPSSSKCSA VTTSDSCRVS  1260
QHKDEPDKSH LPSSPASPPY AAMVIKEEDM ERRDNMEFDD DVEDTLIPEL FPEDIFADLD  1320
KLESNSQTMF LSNSSSGGNM ENQGRNSSDD MGINLPNKTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A1e-4721483151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C1e-4721483151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Acts also as a disease resistance protein that specifically recognizes the AvrRps4 type III effector avirulence protein from P.syringae. Heterodimerization with RPS4B is required to form a functional complex to recognize AvrRps4 and to mediate the hypersensitive response (PubMed:25744164). {ECO:0000250|UniProtKB:P0DKH5, ECO:0000269|PubMed:25744164}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap884150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192240.0AB019224.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863534.10.0probable WRKY transcription factor 16 isoform X1
SwissprotQ9FL920.0RRS1B_ARATH; Disease resistance protein RRS1B
TrEMBLD7MKY80.0D7MKY8_ARALL; Predicted protein
STRINGAl_scaffold_0008_4140.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.10.0Disease resistance protein (TIR-NBS-LRR class)