PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 882420 | ||||||||
Common Name | ARALYDRAFT_681864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 736aa MW: 82078.4 Da PI: 8.3958 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.7 | 6.2e-06 | 257 | 279 | 4 | 25 |
---SGGGGTS..--TTTTT-SS-S CS zf-CCCH 4 elCrffartG..tCkyGdrCkFaH 25 ++Crffa G +C+ G++C+F+H 882420 257 VPCRFFAS-GsgYCRNGNNCRFSH 279 68**7777.559************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.896 | 253 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MSASGRKRVS KWDTKEEDTH HLTGIDYTGK SGYKDPEHSR FYPEGNGRNG SRRSGPDDDD 60 EHLKSRQHSG EAWPPRSRVL HDDGDAMMGY YDPRKSSEQD ESRQQYVRQS PSRDRSRARR 120 SGSRSNSTSR SRSRSPLQRV RRDGGGSYDK HKSRARVSPR SGREFDGRYN RAGDYDWEAK 180 NRKTRDTNYY TEDSREQQPM RVGGRTDYSS DFLEENHNSR RETFDPTVRS HRNEFARERE 240 MQRRDVPEGE FHRSSNVPCR FFASGSGYCR NGNNCRFSHH GAPSARGSPE RKPQNEIYSR 300 QENNNHSGTT ERMRNSHRWN DIERSDAGKS SEVEISRVSK GMSEAKGNNS SWIDDMEMSP 360 DWNYGVKTLK KPVNEEHGGV SQSSQSQVLK DALAPAYEHG AAAIAQQDGN QRNIGMFSTV 420 GEKTVASTHH NFSNNLANSA PPVQAFSQNI ENHSAVPYQS TPLAVGGSQV LLPAATNLPG 480 GLNSSNPENG NAQNTVSREE LNHISNISAS LAQFFGNGQP IPHLQSTLNP KQAMQVPEVY 540 GTKEQSTHTQ SDLPSNNSIH TGGVSAVTAL PINNSDTEQL RIPEIVISLA GNPKASSEEN 600 REKKTDEEAS KEPDGRKTGE EKDAAEDGEN VVEEEEDDGA VDEDNKKEKD PKGMRAFKFA 660 LVEIVKELLK PAWKEGGMNK DAYKNIVKKV VDKVTGAIQT GNIPQTQEKI DHYLSASKPK 720 LTKLVQAYVS KVKKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 882420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC084414 | 6e-37 | AC084414.2 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 6e-37 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891459.1 | 0.0 | zinc finger CCCH domain-containing protein 38 | ||||
Swissprot | Q9LIH5 | 0.0 | C3H38_ARATH; Zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | D7KD69 | 0.0 | D7KD69_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4187 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 882420 |
Entrez Gene | 9327521 |