PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 862056 | ||||||||
Common Name | ARALYDRAFT_661500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 47762.4 Da PI: 8.4254 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.7 | 1.9e-11 | 229 | 253 | 2 | 26 |
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 pr+rWt+ LH+rFv+ave LGG+e+ 862056 229 PRMRWTSSLHARFVHAVELLGGHER 253 9**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-8 | 227 | 254 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSMEGVFLEK TKSNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQP EHNNRSSNFE 60 LSLSHHNHPT TRIFHCPDRR TLNLPHQQHY YNPIINGGSL HHQRVDESEI SDLHRPIRGI 120 PVYHNRSFPF HQQNSPSSSL PSLGGGDLDQ ISILNSSSGY NNAYRSLQSS PRLKGVPLHH 180 HHHHNHYGSV VGSSDSSSPH HHNHHHHHHG MIRSRFLPKM PTKRSMRAPR MRWTSSLHAR 240 FVHAVELLGG HERRGDKSSH HYSMIIIQSF YVLLLNLLSD INLVMYRTVK TTNKPAASSD 300 GSGEEEMGIN GNEVHHHQSS TDQRAQSDDT SLHQEIDISS TQPRWSNSSR ETWPSSNNCS 360 SDIDTMIRTS STSMISHYQR SSLQNQEQRS NDQAKRCGDL SCNNPSLEFT LGRPDWHEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 862056 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY030192 | 0.0 | AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds. | |||
GenBank | AY048688 | 0.0 | AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds. | |||
GenBank | BT026436 | 0.0 | BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878078.1 | 0.0 | transcription repressor KAN1 isoform X2 | ||||
Swissprot | Q93WJ9 | 0.0 | KAN1_ARATH; Transcription repressor KAN1 | ||||
TrEMBL | D7M861 | 0.0 | D7M861_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_1565 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6606 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 862056 |
Entrez Gene | 9307794 |