PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462313
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 1086aa    MW: 119356 Da    PI: 6.5111
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462313genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36e-23148249199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v F   ++++++l+
  678462313 148 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVFFI--RDEKQQLL 243
                99*****************************96555444..8************************************************..5688889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678462313 244 LGIRRA 249
                ***997 PP
2Auxin_resp118.36.3e-39274357183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s+F+v+YnPras+seFv++++++ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
   678462313 274 AAHAASNNSPFTVFYNPRASPSEFVIPLARYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 357
                 79*****************************9998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-42139277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40139263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-20147239No hitNo description
SMARTSM010193.0E-23148250IPR003340B3 DNA binding domain
PfamPF023626.0E-21148249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914148250IPR003340B3 DNA binding domain
PfamPF065074.8E-34274357IPR010525Auxin response factor
PfamPF023093.9E-79711059IPR033389AUX/IAA domain
PROSITE profilePS5174527.7399741058IPR000270PB1 domain
SuperFamilySSF542778.24E-79881052No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MLTSAGGGKG SNFWVLKMGG VVAEKTISAA VLTCAKCDNC RPFFITSVPG FGDHYQPQLY  60
AILILILILR SIGVAASMEK DVDGQIPNYP NLPSKLLCIL HTITLHSDPE TDEVYAQMTL  120
QPVPSFDKDA LLRSDLSMRS NKPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFT  180
MQPPAQELVA KDLHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLIAGD SVFFIRDEKQ  240
QLLLGIRRAN RQPNNLSSSV LSSDSMHIGI LAAAAHAASN NSPFTVFYNP RASPSEFVIP  300
LARYYKAVCS NQISLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW  360
DESTAGEKRN RVSVWEIEPV TSPFFIWPTP PFLRPKRPRQ PGMPDDDYSD PDVLFRRTMP  420
WAGDDLGFKG PQPLPGLSLA QWMSMQQNSS SLAKFISPLP GPVMQNLASN DISRQFGLPA  480
TQMLQAAGFQ GNAMRPNLPA DDPSQNLPSS SLNATGSLMS PLEQMSDLNP HPPRQNFVSQ  540
GLSTRLPVNQ VSAQFTQSQG PLQPPVALPQ QQQSLLNQQL QRSLSENTAL LQQQISNQSL  600
LPSVPSSDIL SHQLLMPDNQ MQIQLLQKLQ HQQTSLLAQQ AGVAQSSFTQ IVDHPKFRDI  660
PQSFGRCVSE NPLMDVPQAT TSMQKPRGNI QNGAAFDKPP LQAKSQQPQQ SGMFSESHGC  720
LESCLNPMNN QVSAGSSSRL TGAVGGGPSA VTEDAPSCSN SPSTNNGTNA ACSVMLFNTN  780
GQEPMFPNGN LVKEIPTVSE EKPAMNTPRN QDFLASHMYA NPACAQVEYL DSSSSATSVL  840
SQNDGQLPHN NHSISFNSQP ALFRTASQEI EVHGDPRNIG LLGSNMENQM ELPVLPDHSM  900
GRNMMESKDF SATMPSGSML MSYDGSKEPQ ADFTSSMASQ SFGGLTFNSM NSTMSDGSFM  960
TRGAWVPQQG GRMRTYTKVY KRGAVGRSID ITRYSGYDEL KQDLARRFGI EGQLEDRQRV  1020
GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGA SAVPNQACSS  1080
SDNGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1465737867388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
TrEMBLA0A2G9HCE80.0A0A2G9HCE8_9LAMI; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19