PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456462
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 493aa    MW: 52623.4 Da    PI: 8.2732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456462genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-054365123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  678456462 43 FVCEICNKGFQRDQNLQLHRRGH 65
               89*******************88 PP
2zf-C2H211.30.0011118140123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H +++
  678456462 118 WKCDKCSKKYAVQSDWKAHSKVC 140
                58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.53E-74265No hitNo description
Gene3DG3DSA:3.30.160.601.6E-54265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9494365IPR007087Zinc finger, C2H2
PfamPF121717.8E-54365IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0174365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM0035511083113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-4106138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.53E-7113138No hitNo description
SMARTSM00355150118138IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFSGDSSPAK PPAKKKRNLP GTPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL  60
HRRGHNLPWK LRQRSGSVKK RVYICPELGC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC  120
DKCSKKYAVQ SDWKAHSKVC GTREYRCDCG TLFSRRDSFV THRAFCDALA EENAKAETRA  180
TPPSSPRDDS DHTRVASPLP APTLPQPPVA VPAPCPQQPS EAPAPLSTPL MPSAVPVHSE  240
VFPLSFVNST CFAATIDCTG ADPVNGEVLE ENSFPAAGCS NSSSSSNSLF ASLFVSSASS  300
SATLPSEPSA TRFNNYLRAI SHPIESLQSS SSEAVSLCLS TNQSPLMFAS SVAQYAPSLQ  360
PAMSATALLQ KAAQMGPTSS KGSLLRGLGL VCSSPSDHDW NIPQIEPPCS SVAAGLRLAI  420
GDDEDSGFKE FMMETQTVFG PKQTTLDFLG LGVSARGGSP AGLPAVVTSI NRGQMPRYST  480
NGAQYAGDDM GGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34114175364Zinc finger protein JACKDAW
5b3h_F3e-34114175364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.21e-168PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ71e-143IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLF6GWY31e-167F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]