PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 499aa    MW: 56412 Da    PI: 9.124
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455510genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.84.5e-3134119187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laLi++r+em+  +r+++lk+plWe+vs++m e gf+rs+k+C+ek+en+ k++k++k+g+ ++ se ++t+++fdqlea
  678455510  34 RWPRQETLALIKIRSEMDPVFRDASLKAPLWEQVSRRMGELGFQRSAKKCREKFENVYKYHKRTKDGRASK-SEGKKTYRFFDQLEA 119
                8*********************************************************************8.66667********85 PP

2trihelix100.51.4e-31334419187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev aLi++r++++ +++ g  k+p Weevs+ m++ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf++lea
  678455510 334 RWPKAEVEALINLRTSLDLKYQGGGPKGPFWEEVSAGMAKMGYKRSSKRCKEKWENINKYYKKVKETNKRR-PEDSKTCPYFHKLEA 419
                8********************************************************************97.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0373193IPR001005SANT/Myb domain
CDDcd122034.82E-243398No hitNo description
PfamPF138372.5E-1833120No hitNo description
PROSITE profilePS500907.0853391IPR017877Myb-like domain
PROSITE profilePS500907.526327391IPR017877Myb-like domain
SMARTSM007170.0013331393IPR001005SANT/Myb domain
CDDcd122033.61E-26333398No hitNo description
PfamPF138371.8E-23333420No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAGVAEAQGG GVTSGGSSEA GVPSSIPADG CGSRWPRQET LALIKIRSEM DPVFRDASLK  60
APLWEQVSRR MGELGFQRSA KKCREKFENV YKYHKRTKDG RASKSEGKKT YRFFDQLEAL  120
ENNPILNVPL SAAVLPSSPT PVTVLPPPPP HPPFQPASYQ QPSHLQSLML SDSTTMSWSS  180
SSSSSSSEEE DTRRQERGSS RSRKRRKKWK AYLEMVMRQV IEKQEQRQQR LLETLEQREM  240
DRIAKEEAWR LQETARINRE HDLLVRERSM AAAKDAAMIA FLQKISDNNT TFQPSNQPPV  300
HPEQPAETSV SRKEEENGGG GVGGGDNSSA SSSRWPKAEV EALINLRTSL DLKYQGGGPK  360
GPFWEEVSAG MAKMGYKRSS KRCKEKWENI NKYYKKVKET NKRRPEDSKT CPYFHKLEAL  420
YQHKTAARSN KSMAPLPQQQ QWPQPLPLQQ QRMYNHNGNS NPEVFGLHED EEEEEDEDED  480
GYEMIGNQQF ASPSPTTAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061369.11e-141trihelix transcription factor GT-2-like
RefseqXP_022885875.11e-142trihelix transcription factor GT-2-like
RefseqXP_022885876.11e-142trihelix transcription factor GT-2-like
SwissprotQ391171e-128TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7JB431e-141A0A3Q7JB43_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-52Trihelix family protein