PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678455510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 499aa MW: 56412 Da PI: 9.124 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98.8 | 4.5e-31 | 34 | 119 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laLi++r+em+ +r+++lk+plWe+vs++m e gf+rs+k+C+ek+en+ k++k++k+g+ ++ se ++t+++fdqlea 678455510 34 RWPRQETLALIKIRSEMDPVFRDASLKAPLWEQVSRRMGELGFQRSAKKCREKFENVYKYHKRTKDGRASK-SEGKKTYRFFDQLEA 119 8*********************************************************************8.66667********85 PP | |||||||
2 | trihelix | 100.5 | 1.4e-31 | 334 | 419 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++ g k+p Weevs+ m++ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf++lea 678455510 334 RWPKAEVEALINLRTSLDLKYQGGGPKGPFWEEVSAGMAKMGYKRSSKRCKEKWENINKYYKKVKETNKRR-PEDSKTCPYFHKLEA 419 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.037 | 31 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.82E-24 | 33 | 98 | No hit | No description |
Pfam | PF13837 | 2.5E-18 | 33 | 120 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 33 | 91 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.526 | 327 | 391 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0013 | 331 | 393 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.61E-26 | 333 | 398 | No hit | No description |
Pfam | PF13837 | 1.8E-23 | 333 | 420 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MAGVAEAQGG GVTSGGSSEA GVPSSIPADG CGSRWPRQET LALIKIRSEM DPVFRDASLK 60 APLWEQVSRR MGELGFQRSA KKCREKFENV YKYHKRTKDG RASKSEGKKT YRFFDQLEAL 120 ENNPILNVPL SAAVLPSSPT PVTVLPPPPP HPPFQPASYQ QPSHLQSLML SDSTTMSWSS 180 SSSSSSSEEE DTRRQERGSS RSRKRRKKWK AYLEMVMRQV IEKQEQRQQR LLETLEQREM 240 DRIAKEEAWR LQETARINRE HDLLVRERSM AAAKDAAMIA FLQKISDNNT TFQPSNQPPV 300 HPEQPAETSV SRKEEENGGG GVGGGDNSSA SSSRWPKAEV EALINLRTSL DLKYQGGGPK 360 GPFWEEVSAG MAKMGYKRSS KRCKEKWENI NKYYKKVKET NKRRPEDSKT CPYFHKLEAL 420 YQHKTAARSN KSMAPLPQQQ QWPQPLPLQQ QRMYNHNGNS NPEVFGLHED EEEEEDEDED 480 GYEMIGNQQF ASPSPTTAH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678455510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061369.1 | 1e-141 | trihelix transcription factor GT-2-like | ||||
Refseq | XP_022885875.1 | 1e-142 | trihelix transcription factor GT-2-like | ||||
Refseq | XP_022885876.1 | 1e-142 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-128 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A3Q7JB43 | 1e-141 | A0A3Q7JB43_SOLLC; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 8e-52 | Trihelix family protein |