PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448021
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 276aa    MW: 30440.8 Da    PI: 8.3506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448021genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.3e-1473124155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+++  A++++k+L+
  678448021  73 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YAQRGDQASVVGGAIDFVKELE 124
                79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.30E-1371128No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1371126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1671137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.50472123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1173124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-978129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MALEALPSAE LFNYIIYDAN LPPELLNNDT SIHHPLPPTP PPQQQQLADP VPGRKKRRRR  60
PKICKNKEEA ETQRMTHIAV ERNRRKQMNE HLSVLRSLMP ESYAQRGDQA SVVGGAIDFV  120
KELEHILQSL EAKKFSAGRS NGEPSVDGGD GGPFAQFFMY PQFSQLGNNK HTSQSKATVA  180
DIEVTLIETH ANVRVLSRRR IRQLSKLVLA FHAVSLSVLH LNVTTVECVA LYSISAKVEE  240
GCQLNSADTI AAAVHHMLRI IEEASGIAAG IVGCQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359RKKRRRR
25459KKRRRR
37384RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265931.11e-110Hop-interacting protein THI018
SwissprotQ9SK915e-72BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2G9GIK01e-119A0A2G9GIK0_9LAMI; Uncharacterized protein
STRINGSolyc08g076820.2.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.16e-70bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]