PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442875
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 346aa    MW: 39071.9 Da    PI: 6.5703
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442875genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.56.1e-35941931100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                aCaaCk++rr+C+++C lap fpa++pk f+nvh+lFG++n+++llk+l++ ++++a++s+ y+A++r + Pv+G++  i++l+  l+ +++el+ + ++
  678442875  94 ACAACKYQRRRCTSECLLAPFFPADDPKMFQNVHRLFGVKNIQNLLKELSPRDKPEAIKSIKYHADMRDKYPVRGCLVEIQQLTYYLHLAQKELQNTLHQ 193
                7********************************************************************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.91593194IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3394189IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSCDLTDHSF DWLLEKGEVC VGVKGRRAAA ALNKRSSLQR RLPLIPGLST FTQSPSTSFF  60
PATNACYDPS SSRHRPPVLA HDPAMTVKSG TSQACAACKY QRRRCTSECL LAPFFPADDP  120
KMFQNVHRLF GVKNIQNLLK ELSPRDKPEA IKSIKYHADM RDKYPVRGCL VEIQQLTYYL  180
HLAQKELQNT LHQLSYYRRH EVSPIPPTGD DYISELQLGI SPPGDTLFAS NNGNGDYCMK  240
YLDFKEENYP QSQCLPTCSS SNENNPQNSS VIISQTFLPQ SPCLQEETHL DFSLFDHMDD  300
TQSSYIGYKE AYESSLESPL RDHSRQQFDE NELKNAAACF SLTSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-26902067123LOB family transfactor Ramosa2.1
5ly0_B1e-26902067123LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442875
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071735.15e-88LOB domain-containing protein 27
TrEMBLA0A022QA292e-80A0A022QA29_ERYGU; Uncharacterized protein
STRINGMigut.D01865.1.p3e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-40LOB domain-containing protein 27