PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440045
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 550aa    MW: 61070.7 Da    PI: 6.3546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440045genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.4e-2658153187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+ +e+laL+++r+em++ +r+++ k+plWeevs++            +e gf+rs+k+C+ek+en+ k++k++k+g+ ++  ++ +t+++f+qlea
  678440045  58 RWPSKETLALLKIRSEMDSVFRDASHKAPLWEEVSRFGtdsvvsvnrkmAELGFQRSAKKCREKFENVYKYHKRTKDGRASK--PAGKTYRFFEQLEA 153
                8************************************99999******9*******************************95..66678*******85 PP
2trihelix99.52.8e-31396481187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev+aLi++r++++ ++ ++  k+plWee+s +m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+qlea
  678440045 396 RWPKAEVHALIKLRTDLDLKYLETGPKGPLWEEISGAMAKLGYNRSSKRCKEKWENINKYYKKVKESKKKR-PENAKTCPYFHQLEA 481
                8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.6157126IPR017877Myb-like domain
PfamPF138372.4E-1457154No hitNo description
CDDcd122031.15E-2257133No hitNo description
PROSITE profilePS500907.399389453IPR017877Myb-like domain
CDDcd122032.19E-24395453No hitNo description
PfamPF138375.1E-23395482No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MILGVSELMG SPGDGGIAGA EVHESGGASG GSSEIGASSL IPGGGVEEIE RVGGAGSRWP  60
SKETLALLKI RSEMDSVFRD ASHKAPLWEE VSRFGTDSVV SVNRKMAELG FQRSAKKCRE  120
KFENVYKYHK RTKDGRASKP AGKTYRFFEQ LEALENNPFL AVAVPPPPPP PRNQTPVTMN  180
NSNPYTAAAS LPTSPTPLSV LPPNLAPPQQ QQISSAFQHQ QSQPAPSFPQ SILQFSNSMS  240
SSSTSSDEDI QRRRGRKRKW KDYLQKLMRE VIQKQEEMQK RFLETLEKRE CDRISREEAW  300
RVQEIARLNR EHELLVQERS AAAAKDAAVV AFLQKITDQQ NLQIPVSLPL PTFPPLPTHE  360
PPPGPAPIRQ PQLEIAELGT GAREENVGGA EGSSSRWPKA EVHALIKLRT DLDLKYLETG  420
PKGPLWEEIS GAMAKLGYNR SSKRCKEKWE NINKYYKKVK ESKKKRPENA KTCPYFHQLE  480
AIYKEKCKNE DPMMAPIMAR PEQQWPPPDQ NPVQNPDDLG LEDDDGDDDD DDEDGAGDGI  540
TPQPPVSSAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258RRGRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101538.11e-167trihelix transcription factor GT-2-like
SwissprotQ391171e-128TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A4D8ZZY41e-166A0A4D8ZZY4_SALSN; Uncharacterized protein
STRINGXP_009618661.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-64Trihelix family protein