PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678400251
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family RAV
Protein Properties Length: 353aa    MW: 41010.4 Da    PI: 9.6317
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678400251genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-0981127254
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                ++kGV    ++g W A+I+       + +r++lg+f ++ +Aa a++ a+ kl+
  678400251  81 RFKGVV-SQQNGHWGAQIYA------NhQRVWLGTFKSEVDAAMAYDSAAIKLR 127
                589996.455899****999......44**********99************98 PP
2B386.13.1e-27201301189
                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                f+k+ltpsdv+k++rlv+pk++a +h            +g+ +e+++l ++d++   W+++++y+ +s+++v+t+GW++Fvk++gLke D++ F+l +r+
  678400251 201 FQKELTPSDVGKLNRLVIPKRYAVKHfpnvpessesnvEGERNEEVQLEFYDRQRTLWKFRYCYWSSSQSFVFTRGWNRFVKEKGLKEHDIIAFYLYERR 300
                99*****************************999999977777999*************************************************77654 PP

                E CS
         B3  89 e 89 
                +
  678400251 301 D 301
                3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.71381136IPR001471AP2/ERF domain
CDDcd000181.23E-2081138No hitNo description
Gene3DG3DSA:3.30.730.101.8E-1681136IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-1481137IPR016177DNA-binding domain
SMARTSM003807.8E-1981142IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-31199301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-24200303No hitNo description
SuperFamilySSF1019361.22E-26200300IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731201318IPR003340B3 DNA binding domain
PfamPF023624.2E-24201301IPR003340B3 DNA binding domain
SMARTSM010195.8E-19201318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MQKSRESVLG THQQVNSPRK EEIRNIQVAI WGLFRETIGK LLLYSRNSVR LSTDEQAEGI  60
RATSMEMLSM VSFPKRSRVE RFKGVVSQQN GHWGAQIYAN HQRVWLGTFK SEVDAAMAYD  120
SAAIKLRSGD SHRNFPWTSI TVQEPRFQTP YTTDAVLNMI RDGSYPMKFA DFLRCQQGEI  180
DARLHLPSIY GDGDFFCSLL FQKELTPSDV GKLNRLVIPK RYAVKHFPNV PESSESNVEG  240
ERNEEVQLEF YDRQRTLWKF RYCYWSSSQS FVFTRGWNRF VKEKGLKEHD IIAFYLYERR  300
DGHRLGQSFL VIDVFPRRLD AGNKESKMES VSGENQNPRE ASKGFRLFGV QID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2820029413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678400251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-149AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6882e-96RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLS8DIS21e-148S8DIS2_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.18e-99RAV family protein