PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398594
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 302aa    MW: 33243.3 Da    PI: 6.6177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398594genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32151209159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s+fprsY+rCts++C vkk+vers  d++vv++tYeg H+h+
  678398594 151 LDDGYRWRKYGQKGVKNSPFPRSYFRCTSTSCGVKKRVERSPGDGSVVITTYEGVHTHP 209
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-33136211IPR003657WRKY domain
SuperFamilySSF1182901.83E-28143211IPR003657WRKY domain
PROSITE profilePS5081129.861146211IPR003657WRKY domain
SMARTSM007743.1E-38151210IPR003657WRKY domain
PfamPF031061.8E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGSGFMLEDA PPPQRAAFLE SDSDQSLMMS FCGITCGEDE EEWGRGELES CLGFGSTCGF  60
DELLLQDVVS LPGEQNFPAA ERSEVVTTPN SSNSTALSTN EGDGDRKLNS PSPLNHDRSH  120
KKHLLGAKKK SIKRKREPRF AFMTKSETDH LDDGYRWRKY GQKGVKNSPF PRSYFRCTST  180
SCGVKKRVER SPGDGSVVIT TYEGVHTHPC PITPRLSFGL VPETAASGCG GAARQGVYSQ  240
PQSIAVPEKL QQTHYLPSFG NTFCETPFGA AMASLELQRD RGLLQDMLRL PSSEMFRDPK  300
ME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-25141211777Probable WRKY transcription factor 4
2lex_A9e-25141211777Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6Q3V01e-59A0A2R6Q3V0_ACTCH; WRKY transcription factor
STRINGXP_009764098.16e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-44WRKY DNA-binding protein 23