PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397580
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 339aa    MW: 36406.4 Da    PI: 7.0379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397580genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000793760123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               +kC+ C+k  s+ s +  H    H
  678397580 37 FKCHVCHKKLSTASGMAIHVLQvH 60
               89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.027867IPR003656Zinc finger, BED-type
SuperFamilySSF576677.01E-51362No hitNo description
SMARTSM00355181336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5173765IPR007087Zinc finger, C2H2
SMARTSM003550.13760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGKKKKRGAV DKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAS GMAIHVLQVH  60
KEQVTKVPNA KPGRESTEID IYGMEGIPAD VLAAHYGEDD EEPSKAAKVD HPAAQMPGSI  120
APGPPGVGFH MRPMLPHYNP RLPGPPAGWT IPPRPQPWNP PGQTGSMAPP AVAPQQPLFP  180
VHNVQPPVVP VAPPSILPIT PPGMPATLPH PVSQPLFPVG PNSNLSQNSP FSAPVAPPLG  240
TSEVTGGEAN YASPYLTNGY NPYGAPVTSV SSHSYASGPN TSGPSIGPPP VIANKAPASQ  300
PATNEVYLVW DDEAMSMEER RMSLPKYQVH DESIQMSFD
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096842.11e-160protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G01e-117SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A4D9BUW61e-159A0A4D9BUW6_SALSN; Uncharacterized protein
STRINGXP_009761829.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA599144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]