PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394626
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 538aa    MW: 59953.2 Da    PI: 7.6516
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394626genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.62e-2938122187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++q++laL+++r++m+ +++++ lk+plWeevs+km+  gf+rs+k+C+ek+en+ k++k++k+g+ ++  ++ +++++fdqlea
  678394626  38 RWPRQQTLALLKIRSDMDPAFKDATLKAPLWEEVSRKMAGLGFQRSAKKCREKFENVYKYHKRTKDGRASK--PDGKNYRFFDQLEA 122
                8********************************************************************95..77789*******85 PP
2trihelix104.95.9e-33358442186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k evlaLi++r++++ +++++  k+plWe++s+ m++ g++rs+k+Ckekwen+nk+ykk+ke+++kr +e+s+tcpyf+qle
  678394626 358 RWPKPEVLALIKLRTNLDLKYQDSGPKGPLWEDISAEMAKLGYNRSSKRCKEKWENINKYYKKVKESNRKR-PEDSKTCPYFHQLE 442
                8*********************************************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.653597IPR001005SANT/Myb domain
CDDcd122031.26E-2337102No hitNo description
PROSITE profilePS500906.4933795IPR017877Myb-like domain
PfamPF138373.7E-1837123No hitNo description
PROSITE profilePS500907.491351415IPR017877Myb-like domain
SMARTSM007170.0019355417IPR001005SANT/Myb domain
PfamPF138372.7E-23357443No hitNo description
CDDcd122031.97E-29358422No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGSPGDNGGV SGGSSEVGAS SSIPIQESGG GGGGGGSRWP RQQTLALLKI RSDMDPAFKD  60
ATLKAPLWEE VSRKMAGLGF QRSAKKCREK FENVYKYHKR TKDGRASKPD GKNYRFFDQL  120
EALEHNPNTL NPFILAPPPP TNDSNPPPYP PAASLPTSPT PLNVLPPSSN PTTFQQPPPV  180
SPHTYQFSTS LLMESLSSAS SDEDQRRGRK RKWKDYLQML MRDVVQKQEE MHRRFLEALE  240
KVERDRIARE EAWRVQEMAR KKREHDLLVQ ERSMAAAKSS AVVAFLQKIT ADAQHNILKL  300
PPSFPLPLPA LQAPLVPTPH QPLPMQQQPP EIRTPTARDE GNSKKNVGSG SGSSSSSRWP  360
KPEVLALIKL RTNLDLKYQD SGPKGPLWED ISAEMAKLGY NRSSKRCKEK WENINKYYKK  420
VKESNRKRPE DSKTCPYFHQ LETIYNDRAR NELLTSSLNP NASSLNAILT APSLMPRTEQ  480
KNSLDNVDLG LNNTNTNEET DEEDEEEEDD DVMEDEDGGG FEMIPPPPST ATTSTAAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RRGRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850213.11e-157trihelix transcription factor GT-2-like
SwissprotQ391171e-129TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7JB431e-147A0A3Q7JB43_SOLLC; Uncharacterized protein
TrEMBLA0A4D8ZZY41e-147A0A4D8ZZY4_SALSN; Uncharacterized protein
STRINGSolyc12g056510.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-103Trihelix family protein