PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678365856
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 438aa    MW: 49326.1 Da    PI: 7.2711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678365856genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062153175323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   Cgk+F +   L++H   H
  678365856 153 CSyeGCGKTFIDAGALRKHSHIH 175
                77779**************7766 PP
2zf-C2H213.70.00018180204123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+  +Cgk F ++s LkrH   H
  678365856 180 HVCQymNCGKKFLDSSKLKRHYLIH 204
                799******************9988 PP
3zf-C2H222.14e-07210234123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                y+Cp   Cgk Fs   nL++H++tH
  678365856 210 YVCPheGCGKAFSLDFNLRSHMKTH 234
                99**********************9 PP
4zf-C2H215.35.7e-05240264123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   Cgk++ + + Lk+H  +H
  678365856 240 HVCPypECGKRYAQEYKLKNHVASH 264
                79********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-13146175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032151175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928151180IPR007087Zinc finger, C2H2
PROSITE patternPS000280153175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-7154204No hitNo description
Gene3DG3DSA:3.30.160.602.6E-12176200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.775180209IPR007087Zinc finger, C2H2
SMARTSM003550.037180204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576672.86E-14191243No hitNo description
Gene3DG3DSA:3.30.160.608.4E-21201234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.882210239IPR007087Zinc finger, C2H2
SMARTSM003551.7E-4210234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-10235266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596240270IPR007087Zinc finger, C2H2
SMARTSM003550.019240264IPR015880Zinc finger, C2H2-like
PfamPF138940.0016240265No hitNo description
PROSITE patternPS000280242265IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-8297326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.23303328IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681303333IPR007087Zinc finger, C2H2
PROSITE patternPS000280305328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQSLNLGSPA LVSCLSNVGD YRLASPLLAA HLHTPHFVSC PSPFSFLIAR AAVAFPSEDG  60
WHGKGFVQAL MDSHVTRSFF DRRPMPKSRS LAPPVKWFKE WVPQDLISTG GKCLVLKWVN  120
EATLNAIKEK LKDPKGLEPE PEPEPTTEVL FLCSYEGCGK TFIDAGALRK HSHIHGERQH  180
VCQYMNCGKK FLDSSKLKRH YLIHTGERDY VCPHEGCGKA FSLDFNLRSH MKTHSQENYH  240
VCPYPECGKR YAQEYKLKNH VASHHEKHQP TILDPPKYTP TERSVKSTKS SGVSGPPSAE  300
RPHGCPYEGC EKAYIHEYKL NLHLRREHPG HFPDDNHKNN DGENDDEGSD QDGYAATKRS  360
SRNSKAQKGS RAKPNLKLPP SKARRTSVTN VSVPKKTWPV RAVEAGEEED SEETEEERDN  420
VGNGWAHAED DEETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-361532648117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678365856
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092328.11e-170uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-130YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLS8EGC51e-167S8EGC5_9LAMI; Uncharacterized protein
STRINGMigut.B00804.1.p1e-165(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]