PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678361741
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29215.5 Da    PI: 8.7786
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678361741genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-163170342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i n+s r+ ++ kR++g+lKK +E+ vLCd+e++ ii+s+
  678361741 31 IANDSERKASYKKRKKGLLKKVKEITVLCDVEACAIIYSP 70
               89************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-192181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.2272169IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2222116IPR002100Transcription factor, MADS-box
CDDcd002661.77E-1522106No hitNo description
PRINTSPR004042.9E-82343IPR002100Transcription factor, MADS-box
PfamPF003191.0E-143170IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-84358IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-85879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MASQFLYLCS SSSKDEDRNK MTRRKVVLAY IANDSERKAS YKKRKKGLLK KVKEITVLCD  60
VEACAIIYSP FHPEGPETWP SREGAAAVLE RFRRLSEMEQ AKKMLNQDSF TRQRIRKLLE  120
NLRRAQKENK RLELEIFMFQ CMAGLASIDA FDITDAAEMS WVVKQMLREV GFRIQDLKMG  180
ATSGPEKGVA PPKTAACPEN ANRDGFDWRP VEESSGESVG FHGGEFVWSD LMAAPPSPYF  240
VDGKCGGGVP KDAWHWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12244RRKVVLAYIANDSERKASYKKRK
24145KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678361741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.13e-60agamous-like MADS-box protein AGL80
TrEMBLS8BVC93e-71S8BVC9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B01455.1.p9e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-40AGAMOUS-like 80