PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678356448
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 346aa    MW: 39848.5 Da    PI: 9.5933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678356448genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06124146123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ Cg++F + + L++H + H
  678356448 124 YVCGVCGRRFYTAEKLNNHFKIH 146
                9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-6121150No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5122146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0021124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
CDDcd061671.09E-4179266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLCLVKCRGV FKRCGYEHIW ILRSFASESA TARSLGYSDS GNHLSSENSV AVFWDLDNKP  60
PKSIPLFDAA IRLKKVAENL GFVKHMVAYG NGHAFSYSSP SARVEGEFGN RRKTWDFIKP  120
KEPYVCGVCG RRFYTAEKLN NHFKIHECEH TKRLNQIESS RGMRRVNLVG KYFMKMEKYR  180
NAAKQMSIPK DGYSLADELK QAGFSFTQAG GARQRIVDMI DRRVINCLVL VSHDSGYEGM  240
LKEWRDCLRT VVVGDTNDGA LKRIADASFS WQEIMMGKAR KEALSVVGKW KDQDVLKRLE  300
WNYDPKTEKK FYRHEMESED FEGIGLNRES DGPWWKLQPE NDVKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678356448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552334.11e-124uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552335.11e-124uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552336.11e-124uncharacterized protein LOC105170049 isoform X2
RefseqXP_020552337.11e-124uncharacterized protein LOC105170049 isoform X2
TrEMBLA0A2G9GCA31e-130A0A2G9GCA3_9LAMI; Uncharacterized protein
STRINGXP_002509600.11e-115(Ricinus communis)
STRINGMigut.D02420.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-102C2H2 family protein