PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678341612
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 525aa    MW: 58800.3 Da    PI: 8.4008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678341612genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.63.5e-2850134187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+ +e+ aL+++r em++ +r+++ k+plWeevs+km e gf+rs+k+C+ek+en+ k++k++k+g+ ++  ++ +t+++f+qlea
  678341612  50 RWPSKETIALLKIRLEMDSVFRDASHKAPLWEEVSRKMGELGFQRSAKKCREKFENVYKYHKRTKDGRASK--PAGKTYRFFEQLEA 134
                8********************************************************************95..66678*******85 PP
2trihelix100.21.6e-31374458186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k evlaLi++r++++ ++ ++  k+plWee+s +m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+ le
  678341612 374 RWPKTEVLALIKLRTDLDLKYLETGPKGPLWEEISGAMAKLGYNRSAKRCKEKWENINKYYKKMKESNKKR-PEDAKTCPYFHLLE 458
                8*********************************************************************8.99999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.847109IPR001005SANT/Myb domain
PROSITE profilePS500906.59749107IPR017877Myb-like domain
CDDcd122033.51E-2449114No hitNo description
PfamPF138378.7E-1849135No hitNo description
SMARTSM007170.0014371433IPR001005SANT/Myb domain
PfamPF138372.0E-22373460No hitNo description
CDDcd122034.45E-29373438No hitNo description
PROSITE profilePS500907.189373431IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSSPRDGGIA AAEVHESGGA SGGSSEIGAS SSVPGGGVEE IERVGGSGSR WPSKETIALL  60
KIRLEMDSVF RDASHKAPLW EEVSRKMGEL GFQRSAKKCR EKFENVYKYH KRTKDGRASK  120
PAGKTYRFFE QLEALDNNPF STVAVPPPRN QPPVTVNSAN PYTVAASFPT SPTPLSVLPP  180
SLAPQHQHIS SSFLQQQSQQ LPPAPTLPPS FLNFSNSMSS SSTSSDKDIQ RRRGRKRTWK  240
DYLQKLMREM IQKQEEMQKR FLETLEKRER ERISREETWR VQEIARLNRE HELLVQERSV  300
AAAKDAAVVA FLQKITDQQN LQIPVSLPLP PFPAIPSQEP PPPIRQPQLE IGELGAGMRE  360
ENVGGTVTAG SSSRWPKTEV LALIKLRTDL DLKYLETGPK GPLWEEISGA MAKLGYNRSA  420
KRCKEKWENI NKYYKKMKES NKKRPEDAKT CPYFHLLESI YKEKAKNEDP MAVPIMARPE  480
QQWPQSQQNL IQNQDDLGMD NEDDEDDDDG SGDGLTNPPP VSTAE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678341612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101538.11e-170trihelix transcription factor GT-2-like
SwissprotQ391171e-134TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3Q7JB431e-164A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGXP_009618661.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-54Trihelix family protein