PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678341612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 525aa MW: 58800.3 Da PI: 8.4008 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.6 | 3.5e-28 | 50 | 134 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+ +e+ aL+++r em++ +r+++ k+plWeevs+km e gf+rs+k+C+ek+en+ k++k++k+g+ ++ ++ +t+++f+qlea 678341612 50 RWPSKETIALLKIRLEMDSVFRDASHKAPLWEEVSRKMGELGFQRSAKKCREKFENVYKYHKRTKDGRASK--PAGKTYRFFEQLEA 134 8********************************************************************95..66678*******85 PP | |||||||
2 | trihelix | 100.2 | 1.6e-31 | 374 | 458 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k evlaLi++r++++ ++ ++ k+plWee+s +m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+ le 678341612 374 RWPKTEVLALIKLRTDLDLKYLETGPKGPLWEEISGAMAKLGYNRSAKRCKEKWENINKYYKKMKESNKKR-PEDAKTCPYFHLLE 458 8*********************************************************************8.99999******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.8 | 47 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.597 | 49 | 107 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.51E-24 | 49 | 114 | No hit | No description |
Pfam | PF13837 | 8.7E-18 | 49 | 135 | No hit | No description |
SMART | SM00717 | 0.0014 | 371 | 433 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.0E-22 | 373 | 460 | No hit | No description |
CDD | cd12203 | 4.45E-29 | 373 | 438 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 373 | 431 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MSSPRDGGIA AAEVHESGGA SGGSSEIGAS SSVPGGGVEE IERVGGSGSR WPSKETIALL 60 KIRLEMDSVF RDASHKAPLW EEVSRKMGEL GFQRSAKKCR EKFENVYKYH KRTKDGRASK 120 PAGKTYRFFE QLEALDNNPF STVAVPPPRN QPPVTVNSAN PYTVAASFPT SPTPLSVLPP 180 SLAPQHQHIS SSFLQQQSQQ LPPAPTLPPS FLNFSNSMSS SSTSSDKDIQ RRRGRKRTWK 240 DYLQKLMREM IQKQEEMQKR FLETLEKRER ERISREETWR VQEIARLNRE HELLVQERSV 300 AAAKDAAVVA FLQKITDQQN LQIPVSLPLP PFPAIPSQEP PPPIRQPQLE IGELGAGMRE 360 ENVGGTVTAG SSSRWPKTEV LALIKLRTDL DLKYLETGPK GPLWEEISGA MAKLGYNRSA 420 KRCKEKWENI NKYYKKMKES NKKRPEDAKT CPYFHLLESI YKEKAKNEDP MAVPIMARPE 480 QQWPQSQQNL IQNQDDLGMD NEDDEDDDDG SGDGLTNPPP VSTAE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678341612 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101538.1 | 1e-170 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-134 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A3Q7JB43 | 1e-164 | A0A3Q7JB43_SOLLC; Uncharacterized protein | ||||
STRING | XP_009618661.1 | 1e-163 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 6e-54 | Trihelix family protein |