PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678337636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 35127.4 Da PI: 9.4352 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 160 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ 678337636 160 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApNCPVKKKVQRSIEDQSILIATYEGEHNHP 219 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-30 | 149 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.831 | 155 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-26 | 157 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-35 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 161 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEFTSLLASP LDLNSKPTRT RDEKPLLLKE ESGDSFLGLA TSILDLPHQR ERTALEEEIK 60 RVGEENKNLK EKLKIVCEKY SDLKNQLERS SKHSAGLESD NNTSGSKKRK ASNNNTINIG 120 TSESTSSDED SVKKPREELV KTTISQVHVR TEASDTSLIV KDGYQWRKYG QKVTRDNPSP 180 RAYFKCSFAP NCPVKKKVQR SIEDQSILIA TYEGEHNHPN PSKFEVNSNP NPNRGVVAVT 240 KTPVPTSTSP TVTLDLTKQK QYGEATRSKV DSSEVQQLLV EHMASVLTKD PSFKASLATA 300 ISGKLLQQSN QVEKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 159 | 221 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678337636 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842669.1 | 1e-108 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 3e-82 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D5YA21 | 1e-110 | A0A0D5YA21_SALMI; WRKY protein | ||||
TrEMBL | A0A4D9AFX4 | 1e-109 | A0A4D9AFX4_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00695.1.p | 1e-98 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-69 | WRKY DNA-binding protein 40 |