PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 315aa    MW: 35127.4 Da    PI: 9.4352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337636genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30160219159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  678337636 160 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApNCPVKKKVQRSIEDQSILIATYEGEHNHP 219
                58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-30149221IPR003657WRKY domain
PROSITE profilePS5081126.831155221IPR003657WRKY domain
SuperFamilySSF1182909.81E-26157221IPR003657WRKY domain
SMARTSM007749.4E-35160220IPR003657WRKY domain
PfamPF031067.4E-25161219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFTSLLASP LDLNSKPTRT RDEKPLLLKE ESGDSFLGLA TSILDLPHQR ERTALEEEIK  60
RVGEENKNLK EKLKIVCEKY SDLKNQLERS SKHSAGLESD NNTSGSKKRK ASNNNTINIG  120
TSESTSSDED SVKKPREELV KTTISQVHVR TEASDTSLIV KDGYQWRKYG QKVTRDNPSP  180
RAYFKCSFAP NCPVKKKVQR SIEDQSILIA TYEGEHNHPN PSKFEVNSNP NPNRGVVAVT  240
KTPVPTSTSP TVTLDLTKQK QYGEATRSKV DSSEVQQLLV EHMASVLTKD PSFKASLATA  300
ISGKLLQQSN QVEKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-211592211374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842669.11e-108probable WRKY transcription factor 40
SwissprotQ9SAH73e-82WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A0D5YA211e-110A0A0D5YA21_SALMI; WRKY protein
TrEMBLA0A4D9AFX41e-109A0A4D9AFX4_SALSN; Uncharacterized protein
STRINGMigut.I00695.1.p1e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-69WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  3. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  5. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  6. Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
    Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(7): p. 1568-1582
    [PMID:27328696]
  7. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  8. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]
  9. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]
  10. Zhang S, et al.
    The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
    Plant Physiol., 2017. 173(4): p. 2294-2307
    [PMID:28250067]
  11. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]