PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336555
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 272aa    MW: 31330.5 Da    PI: 6.9216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336555genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-073453525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                C f+++ G C yG++C++ H
  678336555 34 VCIFYQK-GACAYGSSCSYEH 53
               6******.**********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.117128IPR000571Zinc finger, CCCH-type
SMARTSM003560.28227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4083056IPR000571Zinc finger, CCCH-type
SMARTSM003560.00573155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-53353IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-53453IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.24E-13113187No hitNo description
Gene3DG3DSA:3.30.40.107.9E-10117181IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.80E-4121182No hitNo description
PROSITE profilePS5008912.194122180IPR001841Zinc finger, RING-type
PfamPF000973.2E-6122179IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001849.5E-6122179IPR001841Zinc finger, RING-type
PROSITE patternPS005180146155IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501037.667209234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAERVLCKFF ARWECLKGEQ CEFSHYWKVP ANNVCIFYQK GACAYGSSCS YEHIEVFQSP  60
SSAQLAPETQ VNVEDIVEDV EEEHSASDMS SPSPALRGMD ASGSEQRQKH LDALRRSQEI  120
ECCVCFEPVL SKPTPSERKF GILSECDHSF CISCIRTWRG SCRSSGVNAS SASRACPMCR  180
KVSYFVIPSM TWYYSENEKQ QIVDSYKRKL KTIDCKHFNF GTGKCHFRMH CFYRVRSFYL  240
EHECLLTFEL TPSAYVNPSL RMLEQDDLFR TQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336555
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239556.18e-85PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N42e-75C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A4D9AGJ32e-84A0A4D9AGJ3_SALSN; E3 ubiquitin-protein ligase makorin
STRINGXP_009783087.18e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-57C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]