PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678320780
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 329aa    MW: 36248.8 Da    PI: 6.9578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678320780genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10175223355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  678320780 175 NSHSLAERVRREKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 223
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17170240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-12170227No hitNo description
Gene3DG3DSA:4.10.280.109.4E-18172242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.612172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7175223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-11178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSNGVEPFYI SGWDPLVSPN QDGSFPVSSS MVTQSAAAIP HFSALLESQH MGMGMRILNT  60
SDMMIAEEHK PGFYHISSQN LETKGGSNSC PNSENGGLLG VSPSNARGKR KVEQHPRISS  120
TEIVDDKIND CDPNFNSNYR GKQQAVKQAK DNLIRAENSK ENYVHVRAKR GQATNSHSLA  180
ERVRREKISE RMKLLQDLVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI  240
NMDIDRILPS EILHPQSNEA SIVGTGPGLR YPQSFQGHHP QVPMNGFPVT NPPFHHLPPS  300
SWNSELQSIL RPGFGSDQSI NCLEPSGPS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678320780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074329.13e-98transcription factor bHLH74
SwissprotQ6NKN92e-61BH074_ARATH; Transcription factor bHLH74
TrEMBLA3FM287e-97A3FM28_SESIN; Basic helix-loop-helix protein
STRINGSolyc04g077480.2.18e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]