PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678312710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NF-YA | ||||||||
Protein Properties | Length: 230aa MW: 26268.6 Da PI: 7.7022 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 51.8 | 2.7e-16 | 159 | 195 | 1 | 38 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k+rk 678312710 159 QEPVYVNAKQYHGILRRRQSRAKAELERKL-IKERKAL 195 69****************************.9999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.1E-9 | 157 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 17.726 | 158 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-12 | 160 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 163 | 183 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MQPNSKSDNQ GAPNTLSVVD STACPVPWWN NAVYNSFNRI LMRKNVSDSS SMERSVDGHS 60 LSEGINEEDE DAAKHSSSAV KNYNRDSQNH FQVSSTLHPR NDRSFTQAPQ FELIGHTVAC 120 SNPYDPYHGG LIAPYGQPLV PHMYDIHHTR MPLPLEMTQE PVYVNAKQYH GILRRRQSRA 180 KAELERKLIK ERKALYYLIF PCILLSLFFS YELPFTHCSH IFTSLGINMQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678312710 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844659.1 | 3e-80 | PREDICTED: nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_012844660.1 | 3e-80 | PREDICTED: nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A4D8YAA4 | 7e-80 | A0A4D8YAA4_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9ABZ9 | 8e-80 | A0A4D9ABZ9_SALSN; Uncharacterized protein | ||||
TrEMBL | A5PGU3 | 1e-79 | A5PGU3_ANTMA; YA4 | ||||
STRING | Migut.N02320.1.p | 1e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 7e-33 | nuclear factor Y, subunit A1 |