PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299169
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 374aa    MW: 42612.1 Da    PI: 8.2645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299169genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000516587323
               ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
               C+   Cgk+F +   L++H   H
  678299169 65 CSyeGCGKTFIDAGALRKHSHIH 87
               77779**************7766 PP
2zf-C2H214.40.0001192116123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+  +Cgk F ++s LkrH   H
  678299169  92 HVCQyeNCGKKFLDSSKLKRHYLIH 116
                789999***************9988 PP
3zf-C2H2193.9e-06122146123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                y+Cp   Cgk Fs   nL++H +tH
  678299169 122 YVCPheGCGKAFSLDFNLRSHTKTH 146
                99**********************9 PP
4zf-C2H211.50.00096243268123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                + Cp   C k + + + L+ H+r+ H
  678299169 243 HACPyeGCEKAYIHEYKLNLHLRReH 268
                579999*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-145889IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326387IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9286392IPR007087Zinc finger, C2H2
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
SuperFamilySSF576674.64E-866116No hitNo description
Gene3DG3DSA:3.30.160.607.6E-1390112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01792116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.33992121IPR007087Zinc finger, C2H2
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576678.25E-13103155No hitNo description
Gene3DG3DSA:3.30.160.601.0E-18113147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026122146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591122151IPR007087Zinc finger, C2H2
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-7148178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.663152176IPR007087Zinc finger, C2H2
SMARTSM003550.8152176IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.41E-5154176No hitNo description
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-9237266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-5238265No hitNo description
SMARTSM003550.041243268IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972243273IPR007087Zinc finger, C2H2
PROSITE patternPS000280245268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MILTPFRVCA FEGFLKISSR LEGKCLVLKW VNENTLNAIQ EKLNDPHGLK LEPDPEPTTE  60
VLFLCSYEGC GKTFIDAGAL RKHSHIHGER QHVCQYENCG KKFLDSSKLK RHYLIHTGQR  120
DYVCPHEGCG KAFSLDFNLR SHTKTHSQEN YHVCTYPHCG KLYAHEYKLK NHVASHHQKV  180
GASSSGFQVK VLMPSMLVLL RACLMLQPTM VDPPKYTPPS VRPPKNTKPS TGVSGRPSAE  240
RPHACPYEGC EKAYIHEYKL NLHLRREHPG HFPDDIHKNN DGENDDDGND QDGYAAAKRS  300
RRSRKAQKSS RAKPNLKLPP SKALNRRSAA TNIRLRKKAW PVEEEDSEET LEERDNMVNG  360
WAHAEDDEQT EYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-33561762117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299169
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897013.11e-139zinc finger transcription factor YY1
SwissprotQ2V3L31e-109YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLS8EGC51e-138S8EGC5_9LAMI; Uncharacterized protein
STRINGMigut.B00804.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-99C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]