PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792164
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 336aa    MW: 38876.1 Da    PI: 6.9951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792164genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.17.9e-111689578
        NAM  5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknrat 78
                rF+Ptd elv + L++++eg+k +   +i+++ ++y+ ePw +++  +vk +e+ew+ F++r+k+   +k++  +t
  676792164 16 WRFNPTDVELV-NILHQRIEGEKQSS--FITDIqNLYEKEPWLIQHviHVKFNENEWFNFVTRQKRPGIKKKTDSKT 89
               79*********.88********9666..7888889*********95457777999********99877666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-91480IPR003441NAC domain
PfamPF023652.9E-41689IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTMKIYRRSQ IPGSCWRFNP TDVELVNILH QRIEGEKQSS FITDIQNLYE KEPWLIQHVI  60
HVKFNENEWF NFVTRQKRPG IKKKTDSKTP SRKSNFQNLM ISTQHGVSAP SEELQFSDAP  120
VETHQAQGME RWIGSCSGGA VSYSTSQRQQ TMGQDSNYPI LNGGMLQHQN FGSYGQQKNH  180
ILGHMEQYGQ GFADMVEYQN QYEKTDVWQV PVMRNQALGE EQQWYEYSGP SSAHQYLGHD  240
MVPMTQLLMA HHREQQLAAQ HQHLSVNETM EQHQNLGSCG QFLGESSGQQ QNHILERQAT  300
YLPLREQQRQ NQFRGKETNS SHPAQAMENK QQCNGY
Cis-element ? help Back to Top
SourceLink
PlantRegMap676792164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475344.12e-42PREDICTED: uncharacterized protein LOC108846630
TrEMBLA0A3P6E0A51e-66A0A3P6E0A5_BRAOL; Uncharacterized protein
STRINGBra036314.1-P3e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.13e-09NAC domain containing protein 6