PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676788386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 41698.6 Da PI: 8.8944 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.2e-05 | 115 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F +++ L +H r H 676788386 115 YFCGVCDRRFYTNDKLINHFRQiH 138 78*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 6.3E-5 | 33 | 114 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 1.81E-5 | 114 | 140 | No hit | No description |
PROSITE profile | PS50157 | 11.177 | 115 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 115 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 117 | 138 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 2.01E-12 | 181 | 267 | No hit | No description |
Pfam | PF01936 | 6.8E-7 | 186 | 268 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 6.3E-5 | 200 | 268 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MFSRFVQRIP TRKPPITSLN ITKGSTFSTI NPKPKIRVAV FWDLDNKPPA SFPPYDAALK 60 LRTAASSFGF VKLMVAYANR HAFSYVPLQV REERKERNLR NQLENKGLVK PQEPYFCGVC 120 DRRFYTNDKL INHFRQIHET ENAKRLRQIE SAKGHQRVRL VAKYSMKIEK YKRAARKMLT 180 PKEGYGLAEE LKRAGFWVKM VCDKPEAADR ALKEHMVEVM DKREVECVVL VSDDSGFADV 240 LWEAKERCLR TVVIGDLNEG ALKRVADVAY SWKEVVMGKA KKEVEKVVGK WNDRDVLKKL 300 EWSYDPALEK ARGSSSCGVW DYEFDSDDDE IENGTEVESV EIGDGGDWWE MNNEDDVGSS 360 RR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676788386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877699.1 | 0.0 | uncharacterized protein LOC9308716 | ||||
TrEMBL | A0A1J3JFS6 | 0.0 | A0A1J3JFS6_NOCCA; Uncharacterized protein | ||||
STRING | Bostr.25463s0088.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11444 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 0.0 | C2H2 family protein |