PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676786310
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 369aa    MW: 41334.1 Da    PI: 5.011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676786310genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.4e-49491742128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++
  676786310  49 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS-SSEVI 146
                69************************999.99***************778888999**************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+k+tLvf+ grapkge+t+W+mhey +
  676786310 147 GTKRTLVFHIGRAPKGERTEWLMHEYCM 174
                **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-5339190IPR003441NAC domain
PROSITE profilePS5100551.44748191IPR003441NAC domain
PfamPF023651.8E-2450173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFDGSTSQFT PSRPYAVVAS VLCARAFMEA EAMGVSKDTA ASVEASTVFP GFKFSPTDVE  60
LISYYLKRKM DGLERSVEVI PETDIYNFEP WDLPDKSIVK SDTEWFFFCA RGKKYPHGSQ  120
NRRATKMGYW KATGKERDVK SSSEVIGTKR TLVFHIGRAP KGERTEWLMH EYCMKGVSMD  180
DALVVCRLRR NKEFHSYTSQ KAPEPNLAAE KHMIMQNGAA SSGSPTDWDS MVDFYLAGES  240
GETALTEMAE TAEKLQVHTE EDFFADILRD EIINLDEVVM AGNTPNEVPT LESASTAVRV  300
LPLPNMIDKQ MASLLEERPP QEKKGKEGSG TEPLSSCFVG LYSIKTVNRA RWDVIICVVA  360
LVVMLFYLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-405019219166NO APICAL MERISTEM PROTEIN
1ut4_B1e-405019219166NO APICAL MERISTEM PROTEIN
1ut7_A1e-405019219166NO APICAL MERISTEM PROTEIN
1ut7_B1e-405019219166NO APICAL MERISTEM PROTEIN
3swm_A1e-405019222169NAC domain-containing protein 19
3swm_B1e-405019222169NAC domain-containing protein 19
3swm_C1e-405019222169NAC domain-containing protein 19
3swm_D1e-405019222169NAC domain-containing protein 19
3swp_A1e-405019222169NAC domain-containing protein 19
3swp_B1e-405019222169NAC domain-containing protein 19
3swp_C1e-405019222169NAC domain-containing protein 19
3swp_D1e-405019222169NAC domain-containing protein 19
3ulx_A1e-40331921169Stress-induced transcription factor NAC1
4dul_A1e-405019219166NAC domain-containing protein 19
4dul_B1e-405019219166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676786310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747640.0KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400734.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLV4LID40.0V4LID4_EUTSA; Uncharacterized protein
STRINGXP_006400734.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]