PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784564
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 395aa    MW: 42156.6 Da    PI: 7.955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784564genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
        676784564 139 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 183
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.839132188IPR017930Myb domain
SuperFamilySSF466899.72E-17134187IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18135186IPR006447Myb domain, plants
SMARTSM007171.7E-10136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-11138182IPR009057Homeodomain-like
CDDcd001673.48E-9139184No hitNo description
PfamPF002495.0E-11139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGGGGGTC GGNGGGGGGS SSSFSSAAVK LFGVRLTDGS  60
IIKKSASMGN LSALAVAAAA AHHRLSPSSP LATGNHNDSP LSDHARYSNQ DNEGGYLSDD  120
PAHGSGSVHR RVERKRGVPW TEEEHRLFLV GLQKLGKGDW RGISRNYVTS RTPTQVASHA  180
QKYFIRHNCS SRRKRRSSLF DMVTDEMVTD SSQPQEDQTL TRSFPSKEPE NKTYLPSLEL  240
SLNNTAESEA VIAMAPPQEK PEEAIEPSNG ISPMVVPGGF FPPCFPVTYT IWLPATSTSH  300
QGTEHSLEAE ASSQQHQVLK PKPGFAKERV NMDELVGMSQ LSIGMATRHE TDTSHSPSPL  360
SLELIGEPSR PSAFHSNGSV NGSELSKGNS AIQAI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297882.10.0transcription factor MYBS3
TrEMBLA0A1J3D7E00.0A0A1J3D7E0_NOCCA; Transcription factor MYB1R1
STRINGXP_006297882.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein