PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780198
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 485aa    MW: 53809.8 Da    PI: 5.8896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780198genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001187109123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C  Cgk+F++   L  H r H
  676780198  87 HICCECGKRFKSGKALGGHKRIH 109
                68*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-482109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-785160No hitNo description
SMARTSM003550.1987109IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-787109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.59687114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM003552.9138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954138160IPR007087Zinc finger, C2H2
PfamPF139120.0058140161IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-7334357No hitNo description
SMARTSM003553.2335357IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-9335359IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473335362IPR007087Zinc finger, C2H2
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-7399426No hitNo description
SMARTSM003550.2404426IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-13404427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078404426IPR007087Zinc finger, C2H2
PROSITE patternPS000280406426IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDKLRGYKAN CGFSLGRPRF GSLKVKIPNL QPFIAEKRRE IEEYQAEDDE EEAKSIGLRE  60
EEEDDDDDDG AKSMDLEGDV EEEEKKHICC ECGKRFKSGK ALGGHKRIHV LQTRKFSMVR  120
PKMVSGVVGR SERGEFEVDC CVCHKKFTSM KALYGHMRFH PDRGWKGVLP PPHPLGNSSS  180
STLSIDDHDH DEFMSSDYDD DYDNDDEDDE NSELWNNHWE IENVVDLKES LKGWPATGKR  240
GRRSALKDPP SETMKDNIDA KDLLFLATTA EAVNLDVAET SDSHSVEERI KKTKKKKNRK  300
LSEMEKESSP THDRHQQEVV VAAAAEEGGG AREKHVCVPC NKSFTSYQAL GGHRASHNKV  360
KILENHQARA NSEALLLGTE AMITGLASAQ GSNTSLSSSN NGDHVCNICH KSFPTGQALG  420
GHKRCHWTGP VSSEVATAAP TAATAAPTAP VAASSSQVRE TVQEVKKLKR TFLEFDLNEL  480
PPNEE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411941e-164AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401365.10.0zinc finger protein ZAT4
TrEMBLV4LSG10.0V4LSG1_EUTSA; Uncharacterized protein
STRINGXP_006401365.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-164C2H2 family protein