PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676765468

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 468aa MW: 51118.3 Da PI: 5.3948

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676765468	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.1e-15	215	269	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr+rr+ +NRe+ArrsR+RK++++ eL + v +L +e +aL k+l+ ++++++ 676765468 215 DVKRARRMLSNRESARRSRRRKQEQMNELDTQVGQLRTEHSALLKRLSDMNQKYD 269 78******************************************88888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-17	213	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.231	215	269	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-13	216	269	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-10	216	268	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-11	217	268	No hit	No description
PROSITE pattern	PS00036	0	220	235	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.8E-12	284	325	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSSVFSVDDL SDSFWSPPQG DGMTRSQSEW ALQKLLEEIS IPAGSSIFSS SATDNAIGRS 60 SPQLQSESSV SKPDEAAPSD NAGVVEIQKP HRLGGSLTPA PSSSVEIDPK QYQAILKSKL 120 ELACAAVALR VATVKPEDSS ASSVNQKQPS PIRAQTQGPV VAQMSPAVSS IGGDPSLGTQ 180 NKPDGQVRQA TSGSSRDDSD DDGDTETTEN ADPADVKRAR RMLSNRESAR RSRRRKQEQM 240 NELDTQVGQL RTEHSALLKR LSDMNQKYDT AVVDNRILKA DIETLRTKVK MAEETVKRVT 300 GMNPLLLARP NSIPFNNSTP MDASQPNLNH ILKPAIPSVT GLIPNDTVVP LNMSPVSSIE 360 LTNSTKEAPS LPQNVSLSDR LPEQWEQEID HKIEMRWICD MRVQLEEMWW SQKVGKKSSL 420 LSLSDNFNTS TLLFRGVTQK DWLCPNISGL FNLGPSVGLR PDDPKRAL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSSVFSVDDL SDSFWSPPQG DGMTRSQSEW ALQKLLEEIS IPAGSSIFSS SATDNAIGRS  60
SPQLQSESSV SKPDEAAPSD NAGVVEIQKP HRLGGSLTPA PSSSVEIDPK QYQAILKSKL  120
ELACAAVALR VATVKPEDSS ASSVNQKQPS PIRAQTQGPV VAQMSPAVSS IGGDPSLGTQ  180
NKPDGQVRQA TSGSSRDDSD DDGDTETTEN ADPADVKRAR RMLSNRESAR RSRRRKQEQM  240
NELDTQVGQL RTEHSALLKR LSDMNQKYDT AVVDNRILKA DIETLRTKVK MAEETVKRVT  300
GMNPLLLARP NSIPFNNSTP MDASQPNLNH ILKPAIPSVT GLIPNDTVVP LNMSPVSSIE  360
LTNSTKEAPS LPQNVSLSDR LPEQWEQEID HKIEMRWICD MRVQLEEMWW SQKVGKKSSL  420
LSLSDNFNTS TLLFRGVTQK DWLCPNISGL FNLGPSVGLR PDDPKRAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	236	RRSRRRKQ
2	231	236	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:19261733, ECO:0000269\|PubMed:19531597}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676765468

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520981.1	1e-121	PREDICTED: basic leucine zipper 25
Swissprot	Q9M1G6	1e-101	BZP25_ARATH; Basic leucine zipper 25
TrEMBL	A0A0D3B5R5	1e-119	A0A0D3B5R5_BRAOL; Uncharacterized protein
STRING	XP_010520981.1	1e-120	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5848	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	7e-89	basic leucine zipper 25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Jain P, et al. A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation. Sci Rep, 2017. 7(1): p. 14343 [PMID:29084982] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]