PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676745766

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 595aa MW: 67031.4 Da PI: 9.2246

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676745766	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	62	83	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H 676745766 62 KCEKCTREFCSPVNYRRHNRMH 83 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.806	61	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MELVKQDGND SLDMLLRRAV GKDPFLSFPR PESNPVQLFQ LLHTLERPGW PLLTPLKIQM 60 QKCEKCTREF CSPVNYRRHN RMHRRLRKPE KDSGKERDAL GEFWNKLSVV DAKEILSLKS 120 MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL 180 DDASEKTFLS SEAAPMQKYI FDGENGKNVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL 240 RCQNLLVEEE EAARRRHAEL LERKKRKKLR QKEQRVKDQK KDTKEDESTT SEEQQQSPAE 300 SSSPLSVTSD SEAQRSDFMP IEDSSSLEEP QVLEMENGRN GETQAPMVDD DGFGNGQNME 360 RRSGRRQMEK RSQHGMPNGF HGNHAPKLGS VRKNGTNRDA RVSTTKVWSR KANNPKSISS 420 DAAVAEQDET KNSEVLIGSV SVTIRNSSLS GEYNQAKCSE EEGRTKTVEA KPTSEQSTGK 480 VWRQVSSQGR KVSTANENTD KKDKNSSSTA PEVKTAHHIS LQFNNHEAKA FLAKRWKEAT 540 SAEHVTLVLS QETDMSGNNN THESSNGVIT AARPKLRMRP EKGTKVKYVP KLRIP

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MELVKQDGND SLDMLLRRAV GKDPFLSFPR PESNPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCTREF CSPVNYRRHN RMHRRLRKPE KDSGKERDAL GEFWNKLSVV DAKEILSLKS  120
MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL  180
DDASEKTFLS SEAAPMQKYI FDGENGKNVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAARRRHAEL LERKKRKKLR QKEQRVKDQK KDTKEDESTT SEEQQQSPAE  300
SSSPLSVTSD SEAQRSDFMP IEDSSSLEEP QVLEMENGRN GETQAPMVDD DGFGNGQNME  360
RRSGRRQMEK RSQHGMPNGF HGNHAPKLGS VRKNGTNRDA RVSTTKVWSR KANNPKSISS  420
DAAVAEQDET KNSEVLIGSV SVTIRNSSLS GEYNQAKCSE EEGRTKTVEA KPTSEQSTGK  480
VWRQVSSQGR KVSTANENTD KKDKNSSSTA PEVKTAHHIS LQFNNHEAKA FLAKRWKEAT  540
SAEHVTLVLS QETDMSGNNN THESSNGVIT AARPKLRMRP EKGTKVKYVP KLRIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	267	RRRHAELLERKKRKK
2	261	268	ERKKRKKL
3	263	267	KKRKK
4	266	276	KKLRQKEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676745766

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413290.1	0.0	uncharacterized protein LOC18029908
Refseq	XP_024004636.1	0.0	uncharacterized protein LOC18029908
TrEMBL	V4MP25	0.0	V4MP25_EUTSA; Uncharacterized protein
STRING	XP_006413290.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein