PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 657aa    MW: 74332.8 Da    PI: 4.7042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743634genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.6e-21181457128
        NAM   7 FhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkevlskkge 98 
                 +Ptd elv + L++++eg++ +  ++i+++ ++y+ ePw L++  +++ +e+ew++F++r+k+       +k +nr +  sg+Wk+tg+ +++++ k+e
  676743634  18 LDPTDFELV-NILHRRIEGETRRP-SFITDIqNMYEKEPWLLQHvsHANVRENEWFYFVTRKKHPGikkvDSKTPNRkVGGSGRWKSTGTLTHIKN-KDE 114
                58*******.88*********777.78999989*********94345566889******9998655444456688885667**************9.889 PP

        NAM  99 lvglkktLvfykg.rapkgektdWvmheyrl 128
                ++g  + + f  + + + ++ t Wvmhey l
  676743634 115 VIGSMQLISFQVNsSGKVAKTTGWVMHEYVL 145
                9*********9552556667899******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.00612161IPR003441NAC domain
PfamPF023658.8E-1218145IPR003441NAC domain
SuperFamilySSF1019419.15E-2519160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAMKVTRPSQ IPGCRSLLDP TDFELVNILH RRIEGETRRP SFITDIQNMY EKEPWLLQHV  60
SHANVRENEW FYFVTRKKHP GIKKVDSKTP NRKVGGSGRW KSTGTLTHIK NKDEVIGSMQ  120
LISFQVNSSG KVAKTTGWVM HEYVLNKPGF QELVLCRIRF HLRKATTPYA PRLTPIMIGL  180
EREDGSTLVE NNSQNHHGVA AAGEELQYSD APVETHQARD MERWTGSCSG EAVSCLASQH  240
QDSNYPISNE SMGQYGQGFG DMVEYQNQSL GQETTDPRHV PMMMSQALNE EQQWNGYSGP  300
SSAHQYLEED RVPMTQCLMV HHEEQQLAAQ PQHFSVNGSM EQYQYFGSYG QFLGESSGQQ  360
QNHIPQRQGT YLPNQFWRSE TNSLHPTQGM EKQQPWNGYS GLFSAQPYYQ VMLHQEFGSS  420
APCLAQSNQY LRQNNDPLAL GELTALQNLS LTQQHQIPGQ ATNLFPTEQQ FYQNQVCGQQ  480
TEPLKVPVMM NQALEEQHNV PSLAQPYDQY NGQNNELPTV PMNPQQQENL VRNSAAQLQL  540
EEQDNFPLMN QPMIEEAMGL PMNQGVDELH GGIVGPRNVD GLVQQLLGYE ANPEMDIEMD  600
LDMDIEMDSE LANFGNEEWA QQLGENTPEE EAELAADLAN CKTLKSLLNF VCPVNVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-14515812162NO APICAL MERISTEM PROTEIN
1ut4_B6e-14515812162NO APICAL MERISTEM PROTEIN
1ut7_A6e-14515812162NO APICAL MERISTEM PROTEIN
1ut7_B6e-14515812162NO APICAL MERISTEM PROTEIN
3swm_A6e-14515815165NAC domain-containing protein 19
3swm_B6e-14515815165NAC domain-containing protein 19
3swm_C6e-14515815165NAC domain-containing protein 19
3swm_D6e-14515815165NAC domain-containing protein 19
3swp_A6e-14515815165NAC domain-containing protein 19
3swp_B6e-14515815165NAC domain-containing protein 19
3swp_C6e-14515815165NAC domain-containing protein 19
3swp_D6e-14515815165NAC domain-containing protein 19
4dul_A6e-14515812162NAC domain-containing protein 19
4dul_B6e-14515812162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896215e-34AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N6PKP11e-139A0A3N6PKP1_BRACR; Uncharacterized protein
STRINGBra036314.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-19NTM1-like 8