PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676743634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 657aa MW: 74332.8 Da PI: 4.7042 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.5 | 3.6e-21 | 18 | 145 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkevlskkge 98 +Ptd elv + L++++eg++ + ++i+++ ++y+ ePw L++ +++ +e+ew++F++r+k+ +k +nr + sg+Wk+tg+ +++++ k+e 676743634 18 LDPTDFELV-NILHRRIEGETRRP-SFITDIqNMYEKEPWLLQHvsHANVRENEWFYFVTRKKHPGikkvDSKTPNRkVGGSGRWKSTGTLTHIKN-KDE 114 58*******.88*********777.78999989*********94345566889******9998655444456688885667**************9.889 PP NAM 99 lvglkktLvfykg.rapkgektdWvmheyrl 128 ++g + + f + + + ++ t Wvmhey l 676743634 115 VIGSMQLISFQVNsSGKVAKTTGWVMHEYVL 145 9*********9552556667899******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.006 | 12 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-12 | 18 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-25 | 19 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MAMKVTRPSQ IPGCRSLLDP TDFELVNILH RRIEGETRRP SFITDIQNMY EKEPWLLQHV 60 SHANVRENEW FYFVTRKKHP GIKKVDSKTP NRKVGGSGRW KSTGTLTHIK NKDEVIGSMQ 120 LISFQVNSSG KVAKTTGWVM HEYVLNKPGF QELVLCRIRF HLRKATTPYA PRLTPIMIGL 180 EREDGSTLVE NNSQNHHGVA AAGEELQYSD APVETHQARD MERWTGSCSG EAVSCLASQH 240 QDSNYPISNE SMGQYGQGFG DMVEYQNQSL GQETTDPRHV PMMMSQALNE EQQWNGYSGP 300 SSAHQYLEED RVPMTQCLMV HHEEQQLAAQ PQHFSVNGSM EQYQYFGSYG QFLGESSGQQ 360 QNHIPQRQGT YLPNQFWRSE TNSLHPTQGM EKQQPWNGYS GLFSAQPYYQ VMLHQEFGSS 420 APCLAQSNQY LRQNNDPLAL GELTALQNLS LTQQHQIPGQ ATNLFPTEQQ FYQNQVCGQQ 480 TEPLKVPVMM NQALEEQHNV PSLAQPYDQY NGQNNELPTV PMNPQQQENL VRNSAAQLQL 540 EEQDNFPLMN QPMIEEAMGL PMNQGVDELH GGIVGPRNVD GLVQQLLGYE ANPEMDIEMD 600 LDMDIEMDSE LANFGNEEWA QQLGENTPEE EAELAADLAN CKTLKSLLNF VCPVNVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-14 | 5 | 158 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-14 | 5 | 158 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-14 | 5 | 158 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-14 | 5 | 158 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swm_B | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swm_C | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swm_D | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swp_A | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swp_B | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swp_C | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
3swp_D | 6e-14 | 5 | 158 | 15 | 165 | NAC domain-containing protein 19 |
4dul_A | 6e-14 | 5 | 158 | 12 | 162 | NAC domain-containing protein 19 |
4dul_B | 6e-14 | 5 | 158 | 12 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676743634 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189621 | 5e-34 | AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3N6PKP1 | 1e-139 | A0A3N6PKP1_BRACR; Uncharacterized protein | ||||
STRING | Bra036314.1-P | 1e-139 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14424 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 2e-19 | NTM1-like 8 |